Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R8625_RS08000 Genome accession   NZ_AP026923
Coordinates   1572569..1573840 (+) Length   423 a.a.
NCBI ID   WP_001113214.1    Uniprot ID   A0A0H2URL5
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1567569..1578840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS07960 (PC0054_15840) - 1568598..1569071 (-) 474 WP_000631889.1 GNAT family N-acetyltransferase -
  R8625_RS07965 (PC0054_15850) - 1569068..1569502 (-) 435 WP_000421871.1 NUDIX hydrolase -
  R8625_RS07970 (PC0054_15860) - 1569552..1570094 (-) 543 WP_130894656.1 hypothetical protein -
  R8625_RS07975 (PC0054_15870) - 1570150..1570620 (-) 471 WP_023935667.1 DUF3013 family protein -
  R8625_RS07980 (PC0054_15880) - 1570911..1571363 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R8625_RS07985 (PC0054_15890) - 1571400..1571579 (-) 180 WP_001132282.1 type II toxin-antitoxin system HicA family toxin -
  R8625_RS07990 (PC0054_15900) - 1571716..1571895 (-) 180 WP_001048906.1 hypothetical protein -
  R8625_RS07995 (PC0054_15910) - 1572060..1572299 (-) 240 WP_000818078.1 hypothetical protein -
  R8625_RS08000 (PC0054_15920) rarA 1572569..1573840 (+) 1272 WP_001113214.1 replication-associated recombination protein A Machinery gene
  R8625_RS08010 (PC0054_15930) - 1574385..1575704 (-) 1320 WP_130894658.1 glycoside hydrolase family 32 protein -
  R8625_RS08015 (PC0054_15940) - 1575714..1577330 (-) 1617 WP_317649111.1 ABC transporter substrate-binding protein -
  R8625_RS08020 (PC0054_15950) - 1577359..1578249 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46999.46 Da        Isoelectric Point: 5.9471

>NTDB_id=82455 R8625_RS08000 WP_001113214.1 1572569..1573840(+) (rarA) [Streptococcus pneumoniae strain PZ900700054]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=82455 R8625_RS08000 WP_001113214.1 1572569..1573840(+) (rarA) [Streptococcus pneumoniae strain PZ900700054]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACTTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 8G28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57

Multiple sequence alignment