Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SC043_RS06220 Genome accession   NZ_CP138309
Coordinates   1234096..1235166 (+) Length   356 a.a.
NCBI ID   WP_003131037.1    Uniprot ID   Q9CG78
Organism   Lactococcus lactis strain B26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1229096..1240166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC043_RS06205 (SC043_06205) - 1229986..1231704 (-) 1719 WP_010905842.1 CocE/NonD family hydrolase -
  SC043_RS06210 (SC043_06210) - 1232604..1232741 (+) 138 WP_153915251.1 hypothetical protein -
  SC043_RS06215 (SC043_06215) - 1232890..1233504 (+) 615 Protein_1206 tyrosine-type recombinase/integrase -
  SC043_RS06220 (SC043_06220) xerS 1234096..1235166 (+) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  SC043_RS06225 (SC043_06225) trmFO 1235211..1236554 (-) 1344 WP_003131150.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SC043_RS06230 (SC043_06230) topA 1236626..1238758 (-) 2133 WP_003131148.1 type I DNA topoisomerase -
  SC043_RS06235 (SC043_06235) dprA 1239019..1239866 (-) 848 Protein_1210 DNA-processing protein DprA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41397.21 Da        Isoelectric Point: 9.6568

>NTDB_id=824536 SC043_RS06220 WP_003131037.1 1234096..1235166(+) (xerS) [Lactococcus lactis strain B26]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=824536 SC043_RS06220 WP_003131037.1 1234096..1235166(+) (xerS) [Lactococcus lactis strain B26]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACACATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTAACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGACGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CG78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.685

100

0.767