Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SC043_RS03840 Genome accession   NZ_CP138309
Coordinates   726726..727397 (+) Length   223 a.a.
NCBI ID   WP_023349288.1    Uniprot ID   -
Organism   Lactococcus lactis strain B26     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 721726..732397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC043_RS03815 (SC043_03815) - 722155..722514 (+) 360 WP_010906119.1 YxeA family protein -
  SC043_RS03820 (SC043_03820) - 722545..722688 (+) 144 WP_014570691.1 hypothetical protein -
  SC043_RS03825 (SC043_03825) - 722703..723482 (+) 780 WP_003132777.1 ABC transporter ATP-binding protein -
  SC043_RS03830 (SC043_03830) - 723475..725478 (+) 2004 WP_033899972.1 ABC transporter permease -
  SC043_RS03835 (SC043_03835) - 725659..726723 (+) 1065 WP_003132781.1 VanZ family protein -
  SC043_RS03840 (SC043_03840) braR 726726..727397 (+) 672 WP_023349288.1 response regulator transcription factor Regulator
  SC043_RS03845 (SC043_03845) - 727384..728259 (+) 876 WP_003132784.1 HAMP domain-containing sensor histidine kinase -
  SC043_RS03850 (SC043_03850) - 728262..729326 (+) 1065 WP_010906116.1 prephenate dehydrogenase -
  SC043_RS03855 (SC043_03855) aroA 729447..730739 (+) 1293 WP_003132786.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  SC043_RS03860 (SC043_03860) - 730763..731251 (+) 489 WP_003132788.1 shikimate kinase -
  SC043_RS03865 (SC043_03865) pheA 731253..732092 (+) 840 WP_023349289.1 prephenate dehydratase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25526.44 Da        Isoelectric Point: 4.8093

>NTDB_id=824522 SC043_RS03840 WP_023349288.1 726726..727397(+) (braR) [Lactococcus lactis strain B26]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNTKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMSRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=824522 SC043_RS03840 WP_023349288.1 726726..727397(+) (braR) [Lactococcus lactis strain B26]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCGTTTTCATTAGAAATTTT
AAATACAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTTACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGTCTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.541

99.552

0.404