Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   SC043_RS03520 Genome accession   NZ_CP138309
Coordinates   656853..658631 (-) Length   592 a.a.
NCBI ID   WP_010906147.1    Uniprot ID   Q9CEM9
Organism   Lactococcus lactis strain B26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 651853..663631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC043_RS03500 (SC043_03500) - 652000..652944 (+) 945 WP_003130319.1 manganese-dependent inorganic pyrophosphatase -
  SC043_RS03505 (SC043_03505) - 652944..653741 (+) 798 WP_010906148.1 DUF1803 domain-containing protein -
  SC043_RS03510 (SC043_03510) pepT 653770..655011 (+) 1242 WP_003130321.1 peptidase T -
  SC043_RS03515 (SC043_03515) yjeM 655291..656817 (+) 1527 WP_003130322.1 glutamate/gamma-aminobutyrate family transporter YjeM -
  SC043_RS03520 (SC043_03520) recQ 656853..658631 (-) 1779 WP_010906147.1 DNA helicase RecQ Machinery gene
  SC043_RS03525 (SC043_03525) adhP 658827..659849 (+) 1023 WP_003130326.1 alcohol dehydrogenase AdhP -
  SC043_RS03530 (SC043_03530) - 659870..660130 (+) 261 WP_017864931.1 hypothetical protein -
  SC043_RS03535 (SC043_03535) - 660209..661660 (-) 1452 WP_003130330.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  SC043_RS03540 (SC043_03540) - 661870..663543 (+) 1674 WP_010906146.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 66958.82 Da        Isoelectric Point: 6.4494

>NTDB_id=824517 SC043_RS03520 WP_010906147.1 656853..658631(-) (recQ) [Lactococcus lactis strain B26]
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVISPLISLMKDQVDQLNIAGI
PATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDYFNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQ
YLPTNPTVLALTATATPKVADDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKSVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGINKPNVRFVIHYALPATIESYYQEAGRAG
RDGLESDANLLFSPNDLRIRNFLIEQSEGDEAHKEHEYEKLRQMQAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERE
LLDITIDAQKVLSCVVRMGERFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNHSQKTVGELIDFLSAESYLNITSGK
FPLLLLSAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVPPFMIFSDSALKEMAQVLPDS
QSQFLQISGVGPVKLKKYGRLFIDKISEYKKS

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=824517 SC043_RS03520 WP_010906147.1 656853..658631(-) (recQ) [Lactococcus lactis strain B26]
ATGAATTTAGAAGCTAAATTAAAAGAAATTTTTGGTTATGACAATTTCCGAAATGGTCAGAAACAAATTATTGAACAAGT
CCTAGATGGACAAGCCACTCTTGGTATTTTACCCACAGGAGCTGGAAAATCAATCTGCTATCAGTTACCAGCTCTTATTC
AACCAGGGCTTACTCTCGTAATCTCCCCACTTATTAGCTTGATGAAAGATCAAGTCGACCAGCTGAATATTGCCGGAATT
CCAGCAACATTTATTAACTCTACCTTAGAGGATTCCGAATCTTATCAAAGAATGCGACAGGTTGAAAATGGCGAAATCAA
GCTTCTTTTTGTAGCACCAGAGCGTTTTTCATTAGACTATTTCAATGCCTTTTTACAAAAACTTCCAATTGATTTAGTTG
CCATAGACGAAGCACACTGCATTTCACAATGGGGGCACGATTTCAGACCCAGTTATGTCGATTTTGCCTCTCATCTCCAA
TATTTACCAACAAATCCTACCGTCTTAGCCCTTACGGCTACTGCGACACCAAAAGTTGCAGATGATATTCAAAAACTTCT
TTCAATTTCCCCCAGTCATACTATTAAAACCGGTTTTCTTAGAGAAAACTTACGTTTTGAAGTAGTCAAAGGGATGGATA
AGAGAACTTTTCTTAAAAATTATCTTAAAAATCAAGAAAGTGAGGCTGCTGGAATTATCTATGCAAGCACTCGTAAAGAA
GTTGAAGAAATTTGTGAATGGCTCAACCATAATCATTTCAAATCCGTTCGTTACCATGCTGGACTGAGCGAACAGGAACG
TCAAATAAATCAAGAACTTTTTCTCTTTGACGAAGTACCGATAATGGTTGCCACTAATGCTTTTGGCATGGGAATCAATA
AACCAAATGTTCGATTTGTGATTCATTATGCCCTTCCCGCAACAATTGAAAGTTATTATCAAGAAGCTGGGCGAGCAGGA
CGGGACGGGCTTGAATCTGATGCTAACCTCCTTTTTTCACCAAATGATTTACGAATTCGTAATTTCTTGATTGAGCAAAG
TGAAGGTGATGAAGCGCACAAGGAACATGAATACGAAAAGCTTCGACAAATGCAAGCATACACAAGTGCCGAAACCTGTT
TACAACGCTATATCTTGCAATATTTTGGTGATGAAGGTGAAGATTGTAAAAAATGTAGTAATTGTCTTGATGAAAGAGAG
CTTCTCGATATTACAATTGATGCTCAAAAAGTCCTATCTTGTGTCGTCCGAATGGGTGAACGTTTTGGTAAGACGGCCGT
AGCACAAGTTTTGATTGGTTCTAAAAATAAAAATATTGCCAAATGGAATTTTGAATCTCTATCGACTTTTGGAATTATGA
AAAACCATTCCCAAAAGACCGTGGGTGAATTAATCGATTTTCTATCTGCTGAAAGTTATTTAAACATTACATCAGGTAAA
TTCCCACTTCTCCTTCTTTCAGCCCAAGGATTAAAAGTCCTCAAAGGACAAATCAAAGTTTATCGCAAAGCTAGCCTAAT
TATTGAATCGAAAACAAAAATTTCTCATCATTTTGATGAAGAATGTTTTGCAAGTATTCGTGCACTTCGACTTGAACTAG
CCAAGGAAGAAGGCGTCCCTCCTTTCATGATTTTTTCTGATAGTGCTCTTAAAGAAATGGCTCAAGTTCTGCCGGATAGT
CAAAGTCAATTTTTACAAATTTCTGGTGTCGGACCTGTTAAACTCAAAAAATATGGAAGGCTTTTTATCGACAAAATATC
TGAATATAAAAAAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(19-179)

Helicase conserved C-terminal domain (Helicase_C)

(214-322)

RecQ zinc-binding (RecQ_Zn_bind)

(335-396)

HRDC domain (HRDC)

(520-584)

RQC domain (RQC)

(399-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CEM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

51.107

99.155

0.507