Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SC043_RS00360 Genome accession   NZ_CP138309
Coordinates   58987..59742 (+) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis strain B26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 53987..64742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC043_RS00340 (SC043_00340) - 56276..56518 (-) 243 Protein_58 SulP family inorganic anion transporter -
  SC043_RS00345 (SC043_00345) - 56728..57249 (+) 522 WP_010905072.1 GNAT family N-acetyltransferase -
  SC043_RS00355 (SC043_00355) - 57713..58888 (+) 1176 WP_010905073.1 pyridoxal phosphate-dependent aminotransferase -
  SC043_RS00360 (SC043_00360) recO 58987..59742 (+) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  SC043_RS00365 (SC043_00365) - 59856..60029 (+) 174 WP_021214949.1 helix-turn-helix transcriptional regulator -
  SC043_RS00370 (SC043_00370) lpdA 60100..61518 (-) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  SC043_RS00375 (SC043_00375) - 61712..63310 (-) 1599 WP_010905075.1 2-oxo acid dehydrogenase subunit E2 -
  SC043_RS00380 (SC043_00380) - 63303..64283 (-) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=824494 SC043_RS00360 WP_003132217.1 58987..59742(+) (recO) [Lactococcus lactis strain B26]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=824494 SC043_RS00360 WP_003132217.1 58987..59742(+) (recO) [Lactococcus lactis strain B26]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534