Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   M2Y48_RS00905 Genome accession   NZ_AP023344
Coordinates   186573..187886 (+) Length   437 a.a.
NCBI ID   WP_212893228.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 181573..192886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y48_RS00880 (JSHR3_01820) - 181581..181805 (+) 225 Protein_173 restriction endonuclease subunit R -
  M2Y48_RS00885 (JSHR3_01830) crdR 181893..182534 (+) 642 WP_001169792.1 copper response regulator transcription factor CrdR -
  M2Y48_RS00890 (JSHR3_01840) crdS 182500..183702 (+) 1203 WP_248420198.1 HAMP domain-containing sensor histidine kinase -
  M2Y48_RS00895 (JSHR3_01850) - 183705..185099 (+) 1395 WP_248419948.1 NAD(P)H-hydrate dehydratase -
  M2Y48_RS00900 (JSHR3_01860) - 185110..186576 (+) 1467 WP_248419949.1 replicative DNA helicase -
  M2Y48_RS00905 (JSHR3_01870) comEC/comE3 186573..187886 (+) 1314 WP_212893228.1 ComEC/Rec2 family competence protein Machinery gene
  M2Y48_RS00910 (JSHR3_01880) mqnP 187915..188799 (+) 885 WP_212782943.1 menaquinone biosynthesis prenyltransferase MqnP -
  M2Y48_RS00915 (JSHR3_01890) - 188792..189286 (+) 495 WP_172414155.1 hypothetical protein -
  M2Y48_RS00920 (JSHR3_01900) - 189299..189802 (+) 504 WP_000953102.1 hypothetical protein -
  M2Y48_RS00925 (JSHR3_01910) - 189799..190602 (+) 804 WP_108303722.1 phosphatidylserine decarboxylase -
  M2Y48_RS00930 (JSHR3_01920) nadA 190592..191602 (+) 1011 WP_248419950.1 quinolinate synthase NadA -
  M2Y48_RS00935 (JSHR3_01930) nadC 191602..192423 (+) 822 WP_248419951.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50186.24 Da        Isoelectric Point: 9.8368

>NTDB_id=82447 M2Y48_RS00905 WP_212893228.1 186573..187886(+) (comEC/comE3) [Helicobacter pylori strain JSHR3]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKISSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=82447 M2Y48_RS00905 WP_212893228.1 186573..187886(+) (comEC/comE3) [Helicobacter pylori strain JSHR3]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGTGCTTTAGTGGGCAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAATCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTACATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment