Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   M2Y48_RS00010 Genome accession   NZ_AP023344
Coordinates   1688..3127 (+) Length   479 a.a.
NCBI ID   WP_248419902.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR3     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y48_RS00005 (JSHR3_00010) dnaA 101..1468 (+) 1368 WP_128021122.1 chromosomal replication initiator protein DnaA -
  M2Y48_RS00010 (JSHR3_00020) comH 1688..3127 (+) 1440 WP_248419902.1 competence protein Machinery gene
  M2Y48_RS00020 (JSHR3_00030) - 3306..4058 (+) 753 WP_000767569.1 exodeoxyribonuclease III -
  M2Y48_RS00025 (JSHR3_00040) - 4055..4690 (-) 636 WP_000668030.1 outer membrane protein -
  M2Y48_RS00030 (JSHR3_00050) - 4694..5047 (-) 354 WP_000837002.1 hypothetical protein -
  M2Y48_RS00035 (JSHR3_00060) recG 5129..6994 (+) 1866 WP_248419903.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54915.98 Da        Isoelectric Point: 7.4580

>NTDB_id=82439 M2Y48_RS00010 WP_248419902.1 1688..3127(+) (comH) [Helicobacter pylori strain JSHR3]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKKPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNTPIQKPQNKPTSSQQSLQNFPYTESKLGSKNPKNSLLQPL
ATPNKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNANINEHNESNENRDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRIDEDKQTAIDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQVEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSKVICVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=82439 M2Y48_RS00010 WP_248419902.1 1688..3127(+) (comH) [Helicobacter pylori strain JSHR3]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAAAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCCGCACCAAATGCCTTCTTTAAACACGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTCCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAATAAGTTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAATCTCTTTGTAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACTCCTAACGCTAATATTA
ATGAACACAATGAAAGCAATGAAAATAGGGATAATGTAGAAAAACAAGCCATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACA
GACTGCGATAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTCCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGAGCCAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATC
AAGTAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATCTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCCTTGAGTATTGAAAACTCTAAAGTTATTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.276

100

0.923

Multiple sequence alignment