Detailed information NTG0824371

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: R3F78_RS08220
• Genome accession: NZ_CP138301
• Coordinates: 1248904..1251546 (+)
• Length: 880 a.a.
• NCBI ID: WP_232674562.1
• Uniprot ID: -
• Organism: Bradyrhizobium japonicum strain CNPSo 29
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1243904..1256546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3F78_RS08200 (R3F78_08195)	-	1245150..1245992 (+)	843	WP_039154355.1	hypothetical protein	-
R3F78_RS08205 (R3F78_08200)	-	1246023..1246886 (-)	864	WP_014491673.1	alpha/beta fold hydrolase	-
R3F78_RS08210 (R3F78_08205)	-	1247101..1247760 (+)	660	WP_039154353.1	TIGR02594 family protein	-
R3F78_RS08215 (R3F78_08210)	-	1247874..1248662 (-)	789	WP_039154352.1	MOSC domain-containing protein	-
R3F78_RS08220 (R3F78_08215)	clpC	1248904..1251546 (+)	2643	WP_232674562.1	ATP-dependent chaperone ClpB	Regulator
R3F78_RS08225 (R3F78_08220)	-	1251627..1251893 (-)	267	WP_014491677.1	hypothetical protein	-
R3F78_RS08230 (R3F78_08225)	-	1251977..1253596 (-)	1620	WP_039154349.1	SMP-30/gluconolactonase/LRE family protein	-
R3F78_RS08235 (R3F78_08230)	-	1253752..1255815 (-)	2064	WP_028170103.1	M23 family metallopeptidase	-

Sequence

Protein

• Length: 880 a.a.
• Molecular weight: 96728.11 Da
• Isoelectric Point: 5.7161

>NTDB_id=824371 R3F78_RS08220 WP_232674562.1 1248904..1251546(+) (clpC) [Bradyrhizobium japonicum strain CNPSo 29]
MNIDKYTERSRGFVQSAQSLAVREGHQQFSTLHVLKVLLDDNEGLAAGLIDRAGGNSRAILKATEDALNKVPKVSGGGAG
QIYLAPELARTFDAAEKAGEKAGDSFVTVERLLLGLALEKTSEAGAILAKGGVTPQNLNAAIEALRKGRTADSATAENAY
DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPETLQDKKLL
SLDLGALIAGAKYRGEFEERLKAVLQEVTASEGTFILFIDEMHTLIGAGKGDGAMDASNLLKPALARGELHCIGATTLDE
YRKHVEKDAALARRFQPIFVSEPSVEDTISILRGLKDKYEQHHGVRITDSALVAATTLSNRYITDRFLPDKAIDLMDEAA
ARLKMQVDSKPEELDSLDREIIRLKIEQEALKKESDLGSKTRLEGLQRELSELEEKSAALTSRWSAEKDKLSNAQKLKSE
LDALRVDLADAQRRGEFQKAGELAYGRIPQLEKQLADIEAREGSGDMMEEAVTANHIAQVVSRWTGVPVDKMLEGEKEKL
LKMEEQLGKRVVGQAEAVRAVATAVRRSRAGLQDPNRPTGSFMFLGPTGVGKTELTKALAEYLFNDETAMVRLDMSEYME
KHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSN
LGSEYLVNQPEGEDTSAVREQVMGMVRGHFRPEFLNRVDEIILFHRLQRSEMGRIVEIQFARLQKLLTDRKIVLTLDAAG
RDWLAAKGWDPAYGARPLKRVVQRYLQDPLAEMILAGDVKDGDNVAISSEGNVLTFNGKAPQTAEIAQFEAPPVSKRKLN

Nucleotide

• Length: 2643 bp

>NTDB_id=824371 R3F78_RS08220 WP_232674562.1 1248904..1251546(+) (clpC) [Bradyrhizobium japonicum strain CNPSo 29]
ATGAACATCGACAAATATACCGAACGCTCCAGGGGCTTCGTCCAGTCTGCGCAATCGCTTGCGGTACGCGAGGGACATCA
GCAGTTTTCGACCCTGCACGTCCTGAAGGTTCTGCTGGACGACAATGAGGGCCTCGCTGCCGGTCTGATCGACCGCGCCG
GCGGCAATTCCCGCGCCATCCTGAAGGCGACCGAGGACGCCCTCAACAAGGTGCCGAAGGTCTCCGGCGGCGGCGCCGGC
CAGATCTATCTGGCGCCCGAGCTCGCCCGCACTTTCGACGCCGCCGAAAAGGCCGGCGAGAAGGCCGGCGACAGCTTTGT
CACCGTCGAGCGGCTGCTGCTCGGCCTCGCGCTGGAAAAGACCAGCGAGGCCGGCGCGATCCTGGCCAAGGGCGGCGTCA
CCCCGCAAAATCTCAATGCTGCGATCGAGGCGCTGCGCAAGGGCCGGACGGCGGACTCCGCGACCGCCGAGAACGCCTAT
GACGCGCTGAAGAAATATGCCCGCGACCTGACCCAGGCTGCGCGCGACGGCAAGCTCGACCCGGTCATCGGCCGCGACGA
GGAGATCCGCCGCACCATCCAGGTGCTCTCGCGCCGGACCAAGAACAATCCCGTCCTGATCGGTGAACCCGGCGTCGGCA
AGACCGCCATCGCCGAGGGCCTCGCGCTGCGCATCGTCAACGGCGACGTGCCCGAGACCCTCCAGGACAAGAAGCTGCTC
TCGCTCGATCTCGGCGCGCTGATTGCGGGTGCGAAGTACCGCGGCGAGTTCGAGGAGCGGCTGAAGGCCGTGCTTCAGGA
AGTCACCGCGAGCGAGGGCACCTTCATCCTGTTCATCGACGAGATGCATACGCTGATCGGCGCCGGCAAGGGCGACGGCG
CGATGGACGCATCCAACCTGCTCAAGCCCGCGCTCGCGCGCGGCGAGCTGCACTGCATCGGCGCCACCACGCTCGACGAG
TACCGCAAGCACGTCGAGAAGGATGCGGCGCTGGCGCGGCGCTTCCAGCCGATCTTCGTCAGCGAGCCCTCGGTCGAGGA
CACCATCTCGATCCTCCGCGGCTTGAAAGACAAGTACGAGCAGCACCACGGCGTGCGGATCACCGATTCCGCGCTCGTGG
CGGCGACGACGCTGTCCAACCGCTACATCACCGACCGCTTCCTGCCGGACAAGGCGATCGACCTCATGGACGAGGCGGCC
GCGCGGCTGAAGATGCAGGTCGATTCCAAGCCGGAAGAGCTGGATTCGCTCGACCGTGAGATCATCCGGCTCAAGATCGA
GCAGGAAGCTCTCAAGAAGGAGAGCGATCTCGGCTCCAAGACCCGTCTCGAGGGGCTTCAGAGGGAGCTCAGCGAGCTCG
AAGAGAAATCCGCGGCCCTGACGTCGCGCTGGAGCGCGGAGAAGGACAAGCTCTCCAACGCCCAGAAGCTGAAGTCGGAG
CTCGACGCGCTGCGCGTCGATCTCGCCGACGCACAGCGGCGCGGCGAATTCCAGAAGGCCGGCGAGCTGGCCTATGGCCG
GATCCCGCAGCTCGAGAAGCAGCTCGCGGACATCGAGGCGCGTGAGGGCTCCGGCGATATGATGGAGGAGGCGGTCACCG
CCAACCACATCGCGCAGGTGGTCTCGCGTTGGACCGGCGTGCCCGTCGACAAGATGCTGGAAGGCGAGAAGGAGAAGCTC
CTGAAGATGGAGGAGCAGCTCGGCAAGCGCGTCGTCGGCCAGGCCGAGGCCGTGCGTGCGGTCGCGACCGCCGTGCGCCG
TTCGCGCGCGGGCCTGCAGGACCCGAACCGGCCGACCGGCTCGTTCATGTTCCTGGGGCCGACCGGCGTCGGCAAGACCG
AGCTGACGAAGGCGCTCGCGGAGTACCTGTTCAACGACGAGACCGCGATGGTCCGCCTCGACATGTCCGAGTACATGGAG
AAGCATTCGGTTTCGCGGCTGATCGGTGCGCCTCCCGGCTATGTCGGCTATGACGAGGGCGGCGCGCTCACCGAAGCGGT
GCGGCGCCGGCCCTATCAGGTCGTGCTGTTCGACGAGATCGAGAAGGCGCATCCTGACGTCTTCAACGTCCTGTTGCAGG
TACTCGACGACGGCCGCCTGACCGATGGCCAGGGCCGCACCGTCGATTTCCGCAACACGCTGATCATCATGACCTCGAAC
CTCGGTTCGGAGTATCTGGTGAATCAACCGGAGGGCGAAGACACCTCAGCCGTGCGTGAGCAGGTGATGGGAATGGTGCG
CGGGCATTTCCGGCCCGAGTTCCTGAACCGTGTCGACGAGATCATCCTGTTCCACCGCCTGCAGAGGAGCGAGATGGGGC
GGATCGTCGAGATCCAGTTCGCCCGGCTGCAGAAGCTTTTGACCGATCGCAAGATCGTGCTGACGCTCGATGCCGCGGGC
CGCGACTGGCTTGCTGCGAAGGGCTGGGATCCCGCCTACGGCGCAAGGCCGCTGAAGCGCGTGGTCCAGCGCTACCTCCA
GGATCCGCTCGCCGAGATGATCCTGGCTGGAGACGTCAAGGACGGGGACAACGTTGCGATCTCGTCCGAAGGCAACGTGC
TGACCTTCAACGGCAAGGCGCCGCAGACCGCGGAGATCGCCCAGTTCGAGGCGCCGCCGGTGTCGAAGCGCAAGCTGAAC
TGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (205-336)

• AAA domain (Cdc48 subfamily) (AAA_2) (597-761)

• AAA lid domain (AAA_lid_9) (344-444)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (767-846)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.399	98.295	0.466
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.788	81.364	0.381
clpC	Lactococcus lactis subsp. cremoris KW2	43.631	83.864	0.366
clpE	Streptococcus pneumoniae R6	45.235	79.886	0.361
clpE	Streptococcus pneumoniae Rx1	45.235	79.886	0.361
clpE	Streptococcus pneumoniae TIGR4	45.235	79.886	0.361
clpE	Streptococcus pneumoniae D39	45.235	79.886	0.361