Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   R3F74_RS43965 Genome accession   NZ_CP138298
Coordinates   9196773..9198638 (-) Length   621 a.a.
NCBI ID   WP_039155469.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain CNPSo 24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9191773..9203638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3F74_RS43945 (R3F74_43935) - 9193002..9193562 (-) 561 WP_039155475.1 carboxymuconolactone decarboxylase family protein -
  R3F74_RS43950 (R3F74_43940) - 9193674..9194837 (-) 1164 WP_039155473.1 PLP-dependent cysteine synthase family protein -
  R3F74_RS43955 (R3F74_43945) - 9194944..9195408 (-) 465 WP_038959792.1 Lrp/AsnC family transcriptional regulator -
  R3F74_RS43960 (R3F74_43950) - 9195572..9196585 (+) 1014 WP_039155471.1 1-aminocyclopropane-1-carboxylate deaminase -
  R3F74_RS43965 (R3F74_43955) recQ 9196773..9198638 (-) 1866 WP_039155469.1 DNA helicase RecQ Machinery gene
  R3F74_RS43970 (R3F74_43960) - 9198910..9199653 (-) 744 WP_038934348.1 polysaccharide deacetylase family protein -
  R3F74_RS43975 (R3F74_43965) - 9199757..9200758 (-) 1002 WP_039155466.1 homoserine O-succinyltransferase MetA -
  R3F74_RS43980 (R3F74_43970) - 9200771..9202072 (-) 1302 WP_039155464.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 68101.87 Da        Isoelectric Point: 7.6111

>NTDB_id=824355 R3F74_RS43965 WP_039155469.1 9196773..9198638(-) (recQ) [Bradyrhizobium japonicum strain CNPSo 24]
MSAPSTAPLPAPANGRDALSVLHSVFGLPGFRGAQGEIIRHVTDGGNCLVLMPTGGGKSLCYQLPSLLREGCGIVVSPLI
ALMRDQVAGLLEAGVNAAALNSSLTLQEASDIERRLIAGDLDLLYVAPERLVTPRCLSLLAQAKVALFAIDEAHCVSQWG
HDFRPEYVGLSIIAERFPNVPRIALTATADELTRKEIVERLRLVDSPQFVSSFDRPNIRYEIVDKRNAVSQLKEFIRERH
AGDAGVVYCLSRNRVEEVAAALDDAGIAALPYHAGLDSSIRSRNQDRFLNEDGIVIVATIAFGMGIDKPDVRFVAHLDLP
KSIEAYYQETGRAGRDGKPSAAWMAYGLSDIVQQRRMIDESSGSDDFKRVSIGKLDALVGLAETAQCRRKRLLAYFGEAE
TAHNCGNCDNCLTPPKMRDGKVLAQKLLSCAYRTGQRFGAMQLIDVLIGRLTEKVTQFGHDKLSVFGIGRELNEKQWRTV
LRQLVAMGHLYSDSEAFGALKLTESARGVLRGETEVWLREEAPGTRVRASRAKSRRGDLAPAANAPQGDVDPELRARLRS
WRSDIARERGVPAYVVLHDATIDGIVRAWPTTLDELRNVPGIGDKKLEHYGDELLQIVKTR

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=824355 R3F74_RS43965 WP_039155469.1 9196773..9198638(-) (recQ) [Bradyrhizobium japonicum strain CNPSo 24]
ATGTCCGCTCCCTCCACCGCCCCGCTGCCTGCGCCGGCCAACGGCCGCGACGCGCTGTCGGTGCTGCATTCGGTGTTCGG
CCTGCCGGGGTTCCGCGGCGCGCAGGGCGAGATCATCCGGCACGTCACGGATGGCGGCAATTGCCTGGTCTTGATGCCGA
CCGGCGGCGGCAAGTCGCTGTGCTATCAATTGCCGTCACTGCTGCGCGAAGGCTGCGGCATCGTGGTGTCGCCGCTGATC
GCGCTGATGCGCGACCAGGTCGCCGGCCTGCTCGAGGCCGGGGTCAACGCCGCGGCGCTGAACTCGTCGCTGACGCTGCA
GGAAGCTTCCGACATCGAGCGCCGCCTGATCGCGGGTGATCTCGACCTGCTCTATGTCGCGCCGGAACGGCTGGTGACGC
CGCGCTGCCTGTCGCTGCTGGCGCAGGCGAAGGTCGCGCTTTTCGCGATCGACGAGGCGCATTGCGTCTCGCAATGGGGC
CATGACTTCCGCCCCGAATATGTCGGCCTCTCCATCATCGCCGAACGTTTTCCGAACGTTCCGCGCATCGCGCTGACCGC
GACCGCCGACGAGCTGACGCGCAAGGAGATCGTCGAGCGCCTCCGGCTCGTCGACAGCCCGCAATTCGTCTCCAGCTTCG
ATCGCCCGAATATCCGCTACGAGATCGTCGACAAGCGCAACGCGGTGTCGCAGCTGAAAGAATTCATCCGGGAGCGGCAT
GCGGGCGACGCCGGCGTGGTCTATTGCCTGTCGCGCAATCGCGTCGAGGAGGTTGCCGCCGCGCTCGACGACGCCGGCAT
TGCGGCGCTGCCCTATCACGCCGGGCTCGACAGCAGCATACGCTCGCGCAACCAGGACCGGTTCCTCAACGAGGACGGCA
TCGTCATCGTCGCGACCATCGCCTTCGGCATGGGCATCGACAAGCCGGACGTGCGCTTCGTCGCCCATCTCGATCTGCCC
AAGAGCATCGAGGCCTATTATCAGGAGACGGGGCGCGCCGGCCGCGACGGCAAGCCGTCGGCGGCCTGGATGGCCTATGG
TCTTTCCGACATCGTGCAGCAGCGGCGCATGATCGACGAGTCCAGCGGTTCTGACGATTTCAAGCGGGTGTCGATCGGCA
AGCTCGACGCACTGGTCGGCCTCGCCGAGACCGCGCAGTGCCGGCGCAAGCGGCTGCTCGCCTATTTCGGCGAGGCGGAG
ACGGCGCACAATTGCGGCAATTGCGACAACTGCCTGACGCCGCCCAAGATGCGCGACGGCAAGGTGCTGGCGCAGAAGCT
GCTGTCCTGCGCCTATCGCACCGGGCAGCGTTTCGGTGCGATGCAGCTGATCGACGTGCTGATTGGTCGCCTTACCGAGA
AGGTGACGCAGTTCGGCCACGACAAATTGTCCGTGTTCGGCATCGGGCGCGAGCTGAACGAGAAGCAGTGGCGCACGGTG
TTGCGGCAGCTGGTGGCGATGGGGCATTTGTACAGCGACAGCGAGGCGTTCGGCGCGCTGAAGCTGACGGAGAGCGCGCG
CGGCGTGCTACGCGGCGAGACCGAGGTGTGGCTGCGCGAGGAAGCGCCGGGCACGCGTGTTCGCGCGAGCCGGGCGAAAT
CCCGCCGTGGTGACCTCGCGCCTGCGGCCAACGCGCCGCAGGGCGATGTCGATCCCGAATTGCGGGCGCGGCTGAGGTCC
TGGCGTTCGGACATCGCGCGCGAACGCGGCGTGCCGGCCTATGTCGTGCTGCACGATGCCACCATCGACGGCATCGTCCG
GGCCTGGCCAACGACGCTGGACGAGCTCCGCAACGTGCCCGGCATCGGCGACAAGAAGCTCGAGCATTACGGCGACGAGC
TGCTTCAGATCGTCAAGACGCGGTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(34-190)

HRDC domain (HRDC)

(553-618)

RQC domain (RQC)

(414-522)

RecQ zinc-binding (RecQ_Zn_bind)

(349-412)

Helicase conserved C-terminal domain (Helicase_C)

(229-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.851

97.424

0.369