Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   R8625_RS05320 Genome accession   NZ_AP026923
Coordinates   1052643..1053107 (-) Length   154 a.a.
NCBI ID   WP_001135782.1    Uniprot ID   P59659
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1047643..1058107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS05300 (PC0054_10480) - 1048594..1049562 (-) 969 WP_317649426.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  R8625_RS05305 (PC0054_10490) pdrM 1049716..1051077 (-) 1362 WP_000278534.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  R8625_RS05310 (PC0054_10500) - 1051088..1051348 (-) 261 WP_001105925.1 hypothetical protein -
  R8625_RS05315 (PC0054_10510) - 1051362..1052630 (-) 1269 WP_317649038.1 dihydroorotase -
  R8625_RS05320 (PC0054_10520) mutX 1052643..1053107 (-) 465 WP_001135782.1 8-oxo-dGTP diphosphatase Machinery gene
  R8625_RS05325 (PC0054_10530) - 1053117..1053770 (-) 654 WP_000401328.1 uracil-DNA glycosylase -
  R8625_RS05330 (PC0054_10540) - 1053908..1054555 (-) 648 WP_001809355.1 hypothetical protein -
  R8625_RS05335 (PC0054_10550) - 1054569..1055282 (-) 714 WP_000499429.1 YjjG family noncanonical pyrimidine nucleotidase -
  R8625_RS05340 (PC0054_10560) dhaM 1055741..1056121 (-) 381 WP_000443787.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  R8625_RS05345 - 1056121..1056195 (-) 75 Protein_1058 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17870.30 Da        Isoelectric Point: 4.2287

>NTDB_id=82430 R8625_RS05320 WP_001135782.1 1052643..1053107(-) (mutX) [Streptococcus pneumoniae strain PZ900700054]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAVREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGMLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=82430 R8625_RS05320 WP_001135782.1 1052643..1053107(-) (mutX) [Streptococcus pneumoniae strain PZ900700054]
ATGCCTCAGTTAGCGACGATTTGTTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGTACGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGATGCTAGAATGGGTTCC
CTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P59659

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

100

100

1