Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R8625_RS05275 Genome accession   NZ_AP026923
Coordinates   1042380..1043450 (+) Length   356 a.a.
NCBI ID   WP_000817879.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037380..1048450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS11010 - 1038268..1038399 (+) 132 WP_079117188.1 LPXTG cell wall anchor domain-containing protein -
  R8625_RS05260 (PC0054_10400) ylqF 1038618..1039469 (+) 852 WP_000201299.1 ribosome biogenesis GTPase YlqF -
  R8625_RS05265 (PC0054_10410) - 1039456..1040235 (+) 780 WP_000201141.1 ribonuclease HII -
  R8625_RS05270 (PC0054_10420) - 1040251..1041801 (+) 1551 WP_317649425.1 ClC family H(+)/Cl(-) exchange transporter -
  R8625_RS05275 (PC0054_10430) xerS 1042380..1043450 (+) 1071 WP_000817879.1 tyrosine recombinase XerS Machinery gene
  R8625_RS05280 (PC0054_10440) - 1043523..1044512 (-) 990 WP_000873987.1 lipoate--protein ligase -
  R8625_RS05285 (PC0054_10450) lpdA 1044576..1046279 (-) 1704 WP_050079423.1 dihydrolipoyl dehydrogenase -
  R8625_RS05290 (PC0054_10460) - 1046325..1047368 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41086.15 Da        Isoelectric Point: 9.6949

>NTDB_id=82429 R8625_RS05275 WP_000817879.1 1042380..1043450(+) (xerS) [Streptococcus pneumoniae strain PZ900700054]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=82429 R8625_RS05275 WP_000817879.1 1042380..1043450(+) (xerS) [Streptococcus pneumoniae strain PZ900700054]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAATGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGCAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994

Multiple sequence alignment