Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SC136_RS20870 Genome accession   NZ_CP138232
Coordinates   4262276..4262905 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain EC958     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4257276..4267905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC136_RS20855 (SC136_20850) helD 4257518..4259572 (-) 2055 WP_001295938.1 DNA helicase IV -
  SC136_RS20860 (SC136_20855) yccF 4259695..4260141 (+) 447 WP_001261235.1 YccF domain-containing protein -
  SC136_RS20865 (SC136_20860) yccS 4260151..4262313 (+) 2163 WP_000875041.1 YccS family putative transporter -
  SC136_RS20870 (SC136_20865) sxy/tfoX 4262276..4262905 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SC136_RS20875 (SC136_20870) sulA 4263124..4263633 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  SC136_RS20880 (SC136_20875) ompA 4263989..4265041 (+) 1053 WP_001346420.1 porin OmpA -
  SC136_RS20885 (SC136_20880) matP 4265117..4265569 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  SC136_RS20890 (SC136_20885) ycbZ 4265755..4267515 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=824282 SC136_RS20870 WP_000839151.1 4262276..4262905(-) (sxy/tfoX) [Escherichia coli strain EC958]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=824282 SC136_RS20870 WP_000839151.1 4262276..4262905(-) (sxy/tfoX) [Escherichia coli strain EC958]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995