Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QJQ58_RS26365 Genome accession   NZ_CP124222
Coordinates   5923167..5924120 (+) Length   317 a.a.
NCBI ID   WP_133380022.1    Uniprot ID   -
Organism   Paenibacillus dendritiformis strain 2022CK-00834     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5918167..5929120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJQ58_RS26335 (QJQ58_26335) - 5918847..5919179 (-) 333 WP_006679300.1 hypothetical protein -
  QJQ58_RS26340 (QJQ58_26340) infC 5919243..5919731 (+) 489 WP_133380027.1 translation initiation factor IF-3 -
  QJQ58_RS26345 (QJQ58_26345) - 5919786..5920259 (-) 474 WP_111156642.1 DUF4188 domain-containing protein -
  QJQ58_RS26350 (QJQ58_26350) - 5920272..5920826 (-) 555 WP_281475488.1 PadR family transcriptional regulator -
  QJQ58_RS26355 (QJQ58_26355) - 5921065..5921334 (+) 270 WP_281475490.1 YqkE family protein -
  QJQ58_RS26360 (QJQ58_26360) - 5921512..5922705 (+) 1194 WP_281475492.1 dicarboxylate/amino acid:cation symporter -
  QJQ58_RS26365 (QJQ58_26365) ceuB 5923167..5924120 (+) 954 WP_133380022.1 ABC transporter permease Machinery gene
  QJQ58_RS26370 (QJQ58_26370) - 5924110..5925060 (+) 951 WP_281475495.1 iron chelate uptake ABC transporter family permease subunit -
  QJQ58_RS26375 (QJQ58_26375) - 5925054..5925812 (+) 759 WP_281475497.1 ABC transporter ATP-binding protein -
  QJQ58_RS26380 (QJQ58_26380) - 5925935..5926897 (+) 963 WP_281475499.1 siderophore ABC transporter substrate-binding protein -
  QJQ58_RS26385 (QJQ58_26385) - 5927141..5928421 (+) 1281 WP_281475500.1 helix-turn-helix transcriptional regulator -
  QJQ58_RS26390 (QJQ58_26390) - 5928777..5928952 (+) 176 Protein_5180 IS256 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35237.63 Da        Isoelectric Point: 10.1878

>NTDB_id=824047 QJQ58_RS26365 WP_133380022.1 5923167..5924120(+) (ceuB) [Paenibacillus dendritiformis strain 2022CK-00834]
MKKRYLVIALILFAFISLFIGVIDIKPWDLFNLNDDKVHTFLVSRVPRLISIILAGVSMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGILVSLMLFTTASPLVKMLVAFVFALAGTMLFMKILDRIKFKDTIFIPLVGLMFGNIISSISTFFAYKYDLI
QNMSSWLQGDFSMIIKGRYELLYISIPLIVIAYLYANKFTVAGMGEDFSKNLGLNYKRVVNIGLILVALVTCTVVLTVGT
IPFLGLIIPNIVSIYRGDNLKNSLSHTALLGAVFVLFCDILGRIIIFPYELSISLTVGVIGSAIFVYMLMRRRAHGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=824047 QJQ58_RS26365 WP_133380022.1 5923167..5924120(+) (ceuB) [Paenibacillus dendritiformis strain 2022CK-00834]
ATGAAGAAGAGATATCTGGTTATTGCGCTAATCCTGTTTGCCTTTATTTCCCTGTTTATCGGGGTCATAGACATTAAGCC
ATGGGATTTGTTCAATCTGAACGACGACAAGGTTCATACTTTTCTCGTCAGTAGGGTGCCAAGGCTTATCAGTATCATTC
TCGCCGGGGTCAGCATGAGCATATGCGGCCTGATTATGCAGCAGCTCAGCCGGAACAAGTTCGTCTCGCCCACGACGGCA
GGGACGCTTGACTCGGCCCGCCTGGGGATACTCGTCTCCTTGATGCTGTTCACGACGGCGAGCCCGTTGGTGAAGATGCT
CGTTGCGTTCGTCTTCGCTTTGGCAGGCACGATGCTGTTCATGAAAATACTGGATCGCATCAAATTCAAAGACACCATCT
TCATTCCGCTCGTCGGATTGATGTTTGGCAATATTATCAGTTCCATTTCCACCTTTTTCGCGTATAAGTATGATTTGATT
CAGAACATGTCCTCGTGGCTGCAGGGCGACTTCTCGATGATTATCAAGGGGCGTTATGAGCTGCTGTATATCAGCATTCC
GCTTATCGTGATTGCATACCTGTATGCGAATAAGTTCACGGTAGCGGGGATGGGCGAGGATTTCTCGAAGAACCTCGGGC
TCAACTACAAGCGCGTGGTCAACATTGGCTTGATCCTGGTGGCGCTCGTTACGTGCACGGTCGTGCTTACCGTTGGGACG
ATTCCTTTCCTGGGTCTCATTATTCCGAATATCGTTTCCATTTACAGAGGCGATAATTTGAAGAATAGCTTGTCGCATAC
CGCGCTTCTCGGGGCCGTATTCGTTCTGTTCTGCGATATATTGGGGCGCATCATCATCTTTCCGTATGAATTGTCGATTA
GCTTGACCGTCGGCGTCATCGGAAGCGCCATTTTCGTCTATATGTTAATGAGGAGAAGGGCACATGGGTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

98.738

0.527