Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   SA976_RS02560 Genome accession   NZ_CP137765
Coordinates   541507..541974 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain GCEC19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 536507..546974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA976_RS02535 (SA976_02535) rpsG 536648..537118 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  SA976_RS02540 (SA976_02540) fusA 537215..539329 (+) 2115 WP_000124700.1 elongation factor G -
  SA976_RS02545 (SA976_02545) tuf 539400..540584 (+) 1185 WP_000031783.1 elongation factor Tu -
  SA976_RS02550 (SA976_02550) bfd 540767..540961 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  SA976_RS02555 (SA976_02555) bfr 541034..541510 (+) 477 WP_000675515.1 bacterioferritin -
  SA976_RS02560 (SA976_02560) pilD 541507..541974 (-) 468 WP_000340171.1 prepilin peptidase Machinery gene
  SA976_RS02565 (SA976_02565) rpsJ 542353..542664 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  SA976_RS02570 (SA976_02570) rplC 542697..543326 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  SA976_RS02575 (SA976_02575) rplD 543337..543942 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  SA976_RS02580 (SA976_02580) rplW 543939..544241 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  SA976_RS02585 (SA976_02585) rplB 544259..545080 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  SA976_RS02590 (SA976_02590) rpsS 545097..545375 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  SA976_RS02595 (SA976_02595) rplV 545390..545722 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  SA976_RS02600 (SA976_02600) rpsC 545740..546441 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  SA976_RS02605 (SA976_02605) rplP 546454..546864 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=824008 SA976_RS02560 WP_000340171.1 541507..541974(-) (pilD) [Escherichia coli strain GCEC19]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=824008 SA976_RS02560 WP_000340171.1 541507..541974(-) (pilD) [Escherichia coli strain GCEC19]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361