Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QCL65_RS21735 Genome accession   NZ_CP124218
Coordinates   4702876..4704243 (-) Length   455 a.a.
NCBI ID   WP_407312468.1    Uniprot ID   -
Organism   Pseudomonas sp. nanlin1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4697876..4709243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL65_RS21710 (QCL65_21540) - 4699966..4700427 (+) 462 WP_407312458.1 methyltransferase family protein -
  QCL65_RS21715 (QCL65_21545) - 4700470..4700838 (+) 369 WP_407312460.1 PilZ domain-containing protein -
  QCL65_RS21720 (QCL65_21550) - 4700840..4701529 (-) 690 WP_407312462.1 HAD-IA family hydrolase -
  QCL65_RS21725 (QCL65_21555) vapB 4701761..4701991 (+) 231 WP_407312464.1 type II toxin-antitoxin system VapB family antitoxin -
  QCL65_RS21730 (QCL65_21560) - 4702147..4702431 (-) 285 WP_407312466.1 DUF6124 family protein -
  QCL65_RS21735 (QCL65_21565) radA 4702876..4704243 (-) 1368 WP_407312468.1 DNA repair protein RadA Machinery gene
  QCL65_RS21740 (QCL65_21570) mscL 4704417..4704827 (+) 411 WP_407312470.1 large-conductance mechanosensitive channel protein MscL -
  QCL65_RS21745 (QCL65_21575) - 4704904..4705680 (-) 777 WP_407312472.1 ferredoxin--NADP reductase -
  QCL65_RS21750 (QCL65_21580) - 4705827..4706951 (+) 1125 WP_407312474.1 methyltransferase -
  QCL65_RS21755 (QCL65_21585) - 4706956..4708320 (-) 1365 WP_407312476.1 DUF1329 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48658.13 Da        Isoelectric Point: 6.8987

>NTDB_id=823957 QCL65_RS21735 WP_407312468.1 4702876..4704243(-) (radA) [Pseudomonas sp. nanlin1]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETVIESGAAAPPSGRTGWAGQQAQIKTLAEVSVEEVPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDKLKVMTETCIEAIIA
TARVEQPKVMVIDSIQTIFTENLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAINELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=823957 QCL65_RS21735 WP_407312468.1 4702876..4704243(-) (radA) [Pseudomonas sp. nanlin1]
ATGGCCAAGGCAAAGCGCTTGTACGGCTGCACCGAGTGCGGCGCCACGTTTCCCAAGTGGGCTGGGCAATGCGGCGAATG
CGGCGCCTGGAATACCCTGGTCGAAACCGTCATCGAAAGCGGCGCGGCGGCGCCTCCCAGTGGGCGTACCGGCTGGGCTG
GGCAGCAGGCGCAAATCAAGACCCTGGCCGAGGTCAGCGTTGAGGAAGTTCCGCGCTTTTCCACGGCGTCCGGTGAACTG
GACCGCGTGCTGGGCGGGGGCCTGGTCGACGGCTCGGTGGTGCTGATTGGCGGCGACCCTGGCATCGGCAAGTCGACCAT
CCTGTTACAGACCTTGTGCAACCTGGCCACACGCATGCCGGCGCTGTACGTCACTGGTGAGGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGGCGCTTGGGGCTGCCCCAGGACAAGCTCAAAGTCATGACCGAAACCTGTATTGAAGCGATCATTGCC
ACCGCGCGTGTTGAGCAGCCCAAGGTCATGGTGATCGACTCCATTCAGACCATCTTCACCGAAAATCTGCAATCGGCGCC
CGGTGGCGTGTCCCAAGTGCGCGAGAGTGCGGCCTTGCTGGTGCGCTACGCCAAACAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTCACCAAGGAAGGCGCCCTGGCCGGGCCGCGGGTATTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGACGGCCGCTTGCGCTTGCTGCGGGCGGTGAAAAACCGTTTCGGTGCGATCAACGAGCTTGGCGTGTTCGG
CATGACCGATCGCGGCTTGAAGGAGGTGTCCAATCCATCTGCGATCTTTCTGACCCGTGCGCAGGAAGAAGTCCCTGGCA
GCGTGGTCATGGCCACGTGGGAAGGCACCCGGCCCATGCTGGTCGAAGTGCAAGCGTTGGTCGACGACAGCCACCTGGCC
AACCCGCGTCGAGTCACCCTGGGCCTGGATCAGAACCGTTTGGCCATGCTGCTGGCGGTCCTGCACCGCCACGGCGGCAT
CCCGACCCACGACCAGGACGTATTCCTCAACGTGGTGGGCGGGGTCAAAGTGCTGGAAACTGCATCGGACCTGGCCTTGA
TGGCCGCGGTGATGTCCAGCTTGCGTAACCGCCCGCTGCCCCATGACTTGCTGGTGTTCGGCGAAGTGGGCTTGTCTGGC
GAAGTACGCCCGGTGCCCAGCGGCCAAGAGCGCCTGAAGGAGGCCGCCAAACACGGCTTCAAGCGCGCCATCGTGCCCAA
AGGCAACGCCCCCAAGGAGTCCCCACCAGGCCTGCAGGTAATCGCGGTAACCCGCCTGGAACAGGCGCTGGATGCGCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.342

100

0.495
  radA Streptococcus mitis SK321

47.368

100

0.475
  radA Streptococcus mitis NCTC 12261

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

47.149

100

0.473
  radA Streptococcus pneumoniae D39

47.149

100

0.473
  radA Streptococcus pneumoniae R6

47.149

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.149

100

0.473