Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QEZ42_RS09390 Genome accession   NZ_CP124202
Coordinates   1849182..1850873 (+) Length   563 a.a.
NCBI ID   WP_036164101.1    Uniprot ID   -
Organism   Lysinibacillus sphaericus strain FY22.JlqLf     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1844182..1855873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEZ42_RS09365 xseB 1844599..1844832 (+) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -
  QEZ42_RS09370 - 1844836..1845717 (+) 882 WP_012295058.1 polyprenyl synthetase family protein -
  QEZ42_RS09375 dxs 1845879..1847780 (+) 1902 WP_012295057.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QEZ42_RS09380 - 1847780..1848598 (+) 819 WP_012295056.1 TlyA family RNA methyltransferase -
  QEZ42_RS09385 argR 1848699..1849148 (+) 450 WP_031417410.1 transcriptional regulator ArgR -
  QEZ42_RS09390 recN 1849182..1850873 (+) 1692 WP_036164101.1 DNA repair protein RecN Machinery gene
  QEZ42_RS09395 - 1850998..1851945 (+) 948 WP_031417413.1 SpoIVB peptidase S55 domain-containing protein -
  QEZ42_RS09400 spo0A 1852338..1853129 (+) 792 WP_031417414.1 sporulation transcription factor Spo0A -
  QEZ42_RS09405 - 1853392..1854384 (+) 993 WP_031417416.1 S-layer homology domain-containing protein -
  QEZ42_RS09410 - 1854467..1854652 (+) 186 WP_031417418.1 hypothetical protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63492.24 Da        Isoelectric Point: 4.6229

>NTDB_id=823908 QEZ42_RS09390 WP_036164101.1 1849182..1850873(+) (recN) [Lysinibacillus sphaericus strain FY22.JlqLf]
MLRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISNSTHPVLKK
LEEAGIEIEEDTVILRRDLNDSGKSICRVNGKLVPLSVLREIGASLIDIHGQHENQELMDEKQHINLLDQFAEEQLLPIQ
KTYSEQYEEYRMLKKDLASISIDEQLMAQRIDLYQFQIKELEEANLRLGEEDELLDERRRLMNYNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALDDAATVDEQFKEASEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEDILAYFEKIKIELNELLNRDEILQVKERRVLEMESVLNELAAELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFE
ELSYFDANGKDQIVFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
VSINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQKARIEEVSRMMSGTEITALTLQHATELLTMAEERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=823908 QEZ42_RS09390 WP_036164101.1 1849182..1850873(+) (recN) [Lysinibacillus sphaericus strain FY22.JlqLf]
GTGTTAAGAGAGCTTAGTATCCGAAACTTTGCTATCATTGAGGATTTGACTGTAAGTTTTTCAGAAGGATTGACAGTGCT
AACTGGGGAAACTGGTGCTGGTAAATCAATTATCATTGATGCTGTTCATTTACTTGCTGGTGGGCGGGGAAATACTGAAT
TTATTCGTCATGGAGCAAGGAAAGCAGAATTAGGTGGTTTATTTCAAATTTCGAATTCCACGCATCCAGTGCTGAAAAAA
TTAGAAGAAGCAGGCATTGAAATTGAAGAAGATACAGTTATTTTACGTCGTGATTTAAATGATTCTGGGAAAAGTATTTG
CCGTGTAAATGGTAAACTTGTGCCATTATCAGTGCTGAGGGAAATTGGTGCGAGTCTTATTGATATTCATGGCCAACATG
AAAATCAAGAGCTGATGGATGAAAAACAACATATCAATTTACTCGACCAGTTTGCAGAAGAACAGCTGTTGCCTATTCAA
AAAACATACAGCGAACAATATGAAGAATATCGAATGCTGAAAAAGGACCTGGCTTCAATTTCTATTGATGAACAATTGAT
GGCACAACGCATTGATTTGTATCAATTTCAAATAAAAGAGCTAGAAGAAGCCAATTTAAGGCTAGGTGAGGAAGATGAGC
TTCTTGATGAACGCCGTCGACTCATGAATTACAATAAAATTTTTGAGCGCTCTAGTGCTGCCTATGAGGCTATTCAGGGA
GAATCAAAAGGTCTTGATTGGATTGGTAATGCAATGGGAGCTTTGGACGATGCAGCAACAGTGGATGAACAATTCAAAGA
AGCTTCCGAGGCAGTGACAACGGCATTTTATGCGCTACAAGATGCGGCTTATCAGGTCAAAAATGTATTAGATGAGTTAG
AGTTTGATCCAGCACGTTTAAATGAGGTGGAGCAACGGTTAGCTTTATTCCAAAATTTAAAACGCAAATATGGTTCGACA
GTGGAGGACATTTTAGCGTATTTTGAAAAAATAAAAATAGAGTTAAATGAACTGCTCAATCGTGATGAAATTTTGCAGGT
GAAAGAGCGAAGAGTGCTTGAAATGGAATCGGTGCTCAATGAGCTTGCTGCAGAACTTTCAACCGTGCGTAAAGCTGCTG
CCCAACAGTTAAGTGAAGCCATTATGGCAGAGTTACGTGAATTACATATGGAAAAAGCTAAATTCATTGTCAATTTTGAA
GAATTGTCATATTTCGATGCAAATGGAAAAGATCAAATTGTTTTCTATATTTCTACCAATGTTGGAGAACCACCAAAGTC
CTTACCGAAAATTGCTTCGGGAGGAGAGTTATCACGAATGATGCTGGCGCTGAAAACCATTTTCTCTTCTTCGAATGGTA
TTACATCCATCATTTTTGATGAAGTGGACACAGGTGTTAGTGGAAGAGTAGCGCAGGCCATTGCAGAAAAAATTGCTGCA
GTATCCATTAATTCTCAAGTGCTTTGCATTTCACACTTACCTCAAGTTGCAGCAATGGCTGATCATCATTACTTTATAAA
AAAAGAAGTCGAACATGATCGAACATTTACTTCTTTATCAGAAATTGATCAGAAGGCACGGATTGAAGAAGTCAGCCGTA
TGATGTCTGGAACAGAAATTACTGCTTTAACGCTACAGCATGCAACAGAGTTATTAACCATGGCAGAAGAACGTAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.86

100

0.542