Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C12CBH8_RS06255 Genome accession   NZ_AP023321
Coordinates   1322761..1324137 (-) Length   458 a.a.
NCBI ID   WP_215532767.1    Uniprot ID   A0A7I8D5V2
Organism   Solibaculum mannosilyticum strain 12CBH8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1317761..1329137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C12CBH8_RS06220 (C12CBH8_12050) - 1317837..1318745 (+) 909 WP_090266240.1 MarR family transcriptional regulator -
  C12CBH8_RS06225 (C12CBH8_12060) - 1318805..1319284 (-) 480 WP_090266238.1 nucleoside-diphosphate kinase -
  C12CBH8_RS06230 (C12CBH8_12070) - 1319369..1319737 (-) 369 WP_090266237.1 VOC family protein -
  C12CBH8_RS06235 (C12CBH8_12080) - 1319753..1320157 (-) 405 WP_090266235.1 DUF5412 family protein -
  C12CBH8_RS06240 (C12CBH8_12090) - 1320261..1321457 (-) 1197 WP_090266233.1 ABC transporter permease -
  C12CBH8_RS06245 (C12CBH8_12100) - 1321450..1322463 (-) 1014 WP_215532766.1 efflux RND transporter periplasmic adaptor subunit -
  C12CBH8_RS06250 (C12CBH8_12110) - 1322608..1322811 (+) 204 WP_141682400.1 hypothetical protein -
  C12CBH8_RS06255 (C12CBH8_12120) radA 1322761..1324137 (-) 1377 WP_215532767.1 DNA repair protein RadA Machinery gene
  C12CBH8_RS06260 (C12CBH8_12130) - 1324200..1325015 (-) 816 WP_215532768.1 N-acetylmuramoyl-L-alanine amidase -
  C12CBH8_RS06265 (C12CBH8_12140) - 1325265..1326491 (+) 1227 WP_099322019.1 cofactor-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48859.41 Da        Isoelectric Point: 6.8961

>NTDB_id=82381 C12CBH8_RS06255 WP_215532767.1 1322761..1324137(-) (radA) [Solibaculum mannosilyticum strain 12CBH8]
MAGKSKVIYCCSECGYEASKWYGKCPGCGQWNTMQEELSASVGSVIGSTGARPATARAVYLRDLSLQEGEKRYGTGMPEL
DRVLGGGLVKGSLVLLGGEPGIGKSTLLMQICKTLGENMTVLYVSGEESGHQLKLRANRLGVNADGLMILAETSLESVVE
QMRAVSPDIVIVDSIQTMNCAAVTSSPGSVTQVRECTNLLMRAAKGMDIPVFLVGHVNKDGAIAGPKVLEHIVDTVLTFE
GERNLSYRLLRAVKNRYGSTNEIGVFEMRDTGLCEVPNPSMMLLSGRPKNVSGTCVACVMEGSRPILAEVQGLVTPTGFG
NPRRMSTGFDYNRLSLLLAVLEKRAGYFFGNQDAYINVVGGLKLDEPAADLTVALSLVSSLKDQAVDDRVIAFGEVGLAG
EIRAVGHAAARISEAARLGFTRIVLPRHNLKNLECAVPEGVELLGVRTIRQAFDAVVG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=82381 C12CBH8_RS06255 WP_215532767.1 1322761..1324137(-) (radA) [Solibaculum mannosilyticum strain 12CBH8]
ATGGCAGGAAAAAGTAAAGTGATCTATTGCTGCAGTGAATGCGGATATGAGGCCTCCAAATGGTACGGTAAATGCCCGGG
ATGTGGCCAGTGGAATACCATGCAGGAGGAACTTTCTGCATCAGTCGGTTCGGTGATAGGTTCCACAGGAGCACGTCCGG
CGACGGCACGGGCAGTTTATCTAAGGGATCTCAGCCTCCAGGAAGGGGAAAAACGATATGGAACCGGGATGCCGGAGCTG
GACCGGGTGCTGGGCGGAGGCCTTGTCAAAGGATCACTGGTACTTTTGGGTGGAGAACCGGGCATTGGCAAATCTACTTT
GCTCATGCAAATCTGCAAAACGCTGGGAGAGAATATGACCGTCCTTTATGTATCGGGAGAAGAGTCGGGACATCAGTTGA
AGCTTCGAGCAAACCGGCTGGGGGTCAACGCCGACGGCCTGATGATCCTAGCGGAAACCAGCCTGGAATCGGTGGTGGAA
CAGATGCGGGCAGTCTCGCCGGACATTGTGATTGTCGACTCCATCCAGACCATGAATTGTGCGGCCGTGACGTCTTCGCC
GGGCAGTGTTACCCAGGTCAGGGAATGCACCAATCTCCTGATGCGCGCTGCAAAAGGTATGGATATTCCGGTATTTTTAG
TAGGACACGTCAACAAGGATGGCGCCATTGCCGGCCCTAAAGTCTTAGAACACATTGTAGACACAGTGCTGACCTTTGAA
GGGGAACGAAACCTCTCGTATCGTCTGCTGCGGGCGGTTAAAAACCGGTATGGCTCCACCAATGAAATCGGCGTTTTTGA
GATGCGGGATACCGGGCTTTGTGAAGTGCCGAACCCTTCGATGATGTTGTTATCCGGCCGCCCGAAGAATGTCTCTGGCA
CCTGTGTGGCCTGTGTGATGGAAGGCTCCCGTCCCATCCTGGCTGAAGTGCAGGGGCTCGTGACGCCCACTGGGTTTGGC
AATCCAAGGAGAATGTCCACTGGGTTTGACTACAACCGTTTGTCGCTATTGCTGGCGGTACTGGAAAAACGGGCGGGATA
CTTTTTTGGCAATCAGGATGCTTATATCAACGTGGTAGGCGGCCTAAAATTAGACGAACCGGCTGCTGATTTGACGGTGG
CCCTTTCTTTGGTATCCAGCCTCAAGGATCAAGCGGTAGACGACCGGGTAATCGCCTTTGGCGAAGTAGGTCTGGCGGGA
GAGATCCGAGCGGTAGGCCATGCAGCCGCCCGGATCAGTGAAGCCGCCCGTCTGGGATTTACCCGCATTGTCTTACCCCG
CCACAACTTGAAAAATCTAGAATGCGCCGTACCCGAAGGGGTGGAATTACTGGGTGTCCGGACCATCCGGCAAGCCTTCG
ATGCCGTGGTTGGGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(75-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(348-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8D5V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.178

100

0.522
  radA Streptococcus pneumoniae Rx1

49.123

99.563

0.489
  radA Streptococcus pneumoniae D39

49.123

99.563

0.489
  radA Streptococcus pneumoniae R6

49.123

99.563

0.489
  radA Streptococcus pneumoniae TIGR4

49.123

99.563

0.489
  radA Streptococcus mitis NCTC 12261

49.123

99.563

0.489
  radA Streptococcus mitis SK321

49.123

99.563

0.489

Multiple sequence alignment