Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QHF92_RS18440 Genome accession   NZ_CP123994
Coordinates   3620501..3621223 (-) Length   240 a.a.
NCBI ID   WP_060399597.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain M3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3615501..3626223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS18405 (QHF92_18405) fliW 3615648..3616079 (-) 432 WP_014115344.1 flagellar assembly protein FliW -
  QHF92_RS18410 (QHF92_18410) - 3616112..3616675 (-) 564 WP_060399592.1 DUF6470 family protein -
  QHF92_RS18415 (QHF92_18415) flgL 3616723..3617619 (-) 897 WP_060399593.1 flagellar hook-associated protein FlgL -
  QHF92_RS18420 (QHF92_18420) flgK 3617629..3619146 (-) 1518 WP_060399594.1 flagellar hook-associated protein FlgK -
  QHF92_RS18425 (QHF92_18425) flgN 3619165..3619647 (-) 483 WP_060399595.1 flagellar protein FlgN -
  QHF92_RS18430 (QHF92_18430) flgM 3619663..3619929 (-) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  QHF92_RS18435 (QHF92_18435) - 3620009..3620428 (-) 420 WP_060399596.1 TIGR03826 family flagellar region protein -
  QHF92_RS18440 (QHF92_18440) comFC 3620501..3621223 (-) 723 WP_060399597.1 ComF family protein Machinery gene
  QHF92_RS18445 (QHF92_18445) comFB 3621187..3621483 (-) 297 WP_003235460.1 late competence protein ComFB -
  QHF92_RS18450 (QHF92_18450) comFA 3621551..3622933 (-) 1383 WP_080429123.1 ATP-dependent helicase ComFA Machinery gene
  QHF92_RS18455 (QHF92_18455) - 3623041..3623886 (-) 846 WP_060399599.1 DegV family protein -
  QHF92_RS18460 (QHF92_18460) degU 3623984..3624673 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QHF92_RS18465 (QHF92_18465) degS 3624756..3625913 (-) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27416.72 Da        Isoelectric Point: 9.6833

>NTDB_id=823753 QHF92_RS18440 WP_060399597.1 3620501..3621223(-) (comFC) [Bacillus inaquosorum strain M3]
MPNEAGGGIHKLICLLCDSQFSQAVTWSALFLLKPDEKVCHSCRSKFKKITGQICTLCGRPQSVHAVCRDCKVWKSRVSA
SLLLRQNRSVYTYNERMKETLSRFKFRGDAEIINAFKSDFSSTFSEVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSTEGMNIILIDDLYTTGATLHFAARCLLEKGKARSVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=823753 QHF92_RS18440 WP_060399597.1 3620501..3621223(-) (comFC) [Bacillus inaquosorum strain M3]
ATGCCAAACGAAGCAGGAGGAGGCATTCATAAACTGATTTGTCTATTGTGCGATTCACAATTTTCTCAAGCTGTTACATG
GAGCGCCCTTTTTTTATTAAAGCCTGACGAAAAGGTCTGTCATTCCTGCAGAAGCAAATTTAAGAAAATCACAGGACAAA
TCTGCACCTTGTGCGGCAGACCTCAATCCGTTCATGCGGTATGCAGAGATTGCAAGGTGTGGAAATCAAGGGTCAGTGCC
AGTTTGCTGCTCCGCCAAAACCGTTCAGTTTACACATATAATGAAAGAATGAAAGAAACGCTTTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTCTCAGAGGTTTACCCCGATAAGCATTTTG
TTCTCGTTCCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCGCAGCTCCTGGCAGAATGCTTA
GATCGGCCTATCCACCATCCCCTTATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
GGAGCGTATTTTTGATACAAAAAACAACTCAACCGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAAAGCCCGTTCAGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.833

100

0.908