Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QHF92_RS13200 Genome accession   NZ_CP123994
Coordinates   2620155..2620565 (-) Length   136 a.a.
NCBI ID   WP_003237136.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain M3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2615155..2625565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS13170 (QHF92_13170) - 2615410..2615541 (-) 132 WP_019258943.1 hypothetical protein -
  QHF92_RS13175 (QHF92_13175) - 2615617..2616348 (-) 732 WP_060399064.1 SGNH/GDSL hydrolase family protein -
  QHF92_RS13180 (QHF92_13180) - 2616601..2617353 (-) 753 WP_060399065.1 N-acetylmuramoyl-L-alanine amidase -
  QHF92_RS13185 (QHF92_13185) - 2617548..2618174 (+) 627 WP_060399066.1 TVP38/TMEM64 family protein -
  QHF92_RS13190 (QHF92_13190) gnd 2618193..2619086 (-) 894 WP_060399067.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QHF92_RS13195 (QHF92_13195) - 2619400..2620122 (+) 723 WP_080429113.1 hypothetical protein -
  QHF92_RS13200 (QHF92_13200) nucA/comI 2620155..2620565 (-) 411 WP_003237136.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QHF92_RS13205 (QHF92_13205) sigK 2620760..2621488 (+) 729 WP_003237137.1 RNA polymerase sporulation sigma factor SigK -
  QHF92_RS13210 (QHF92_13210) - 2621617..2621785 (-) 169 Protein_2556 recombinase family protein -
  QHF92_RS13215 (QHF92_13215) - 2621743..2621921 (-) 179 Protein_2557 hypothetical protein -
  QHF92_RS13225 (QHF92_13225) - 2623336..2624550 (-) 1215 WP_060399070.1 MFS transporter -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14992.02 Da        Isoelectric Point: 5.7516

>NTDB_id=823739 QHF92_RS13200 WP_003237136.1 2620155..2620565(-) (nucA/comI) [Bacillus inaquosorum strain M3]
MKKWMAGLLLAAAVFLCLVVPQPIKSASLYDKVLYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSGYPDGTRVRFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=823739 QHF92_RS13200 WP_003237136.1 2620155..2620565(-) (nucA/comI) [Bacillus inaquosorum strain M3]
ATGAAAAAATGGATGGCAGGCCTGCTTCTTGCTGCAGCAGTTTTTCTTTGTTTAGTGGTTCCGCAGCCGATCAAGAGCGC
TTCTTTGTATGACAAAGTGTTGTATTTTCCGCTGTCTCGTTATCCGGAAACAGGGGATCATATTAGAGATGCGATAGCAG
AGGGGCATTCTGATATTTGTACCATCGACAGGGATGGAGCGGACAAAAGGCGAGAGGAATCATTAAAAGGAATTCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCAATGGCGGTTTGCGAGGAAGGCGGCGCAGGAGCTGACGTCCGATATGTGAC
GCCTTCTGATAATCGCGGGGCCGGCTCGTGGGTAGGGAATCAAATGAGTGGTTATCCTGACGGCACCAGAGTGCGGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529