Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QHF92_RS12410 Genome accession   NZ_CP123994
Coordinates   2486430..2487233 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain M3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2481430..2492233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS12380 (QHF92_12380) - 2482476..2483207 (-) 732 WP_060398992.1 glycerophosphodiester phosphodiesterase -
  QHF92_RS12385 (QHF92_12385) - 2483286..2483906 (-) 621 WP_060398993.1 N-acetylmuramoyl-L-alanine amidase -
  QHF92_RS12390 (QHF92_12390) - 2483926..2484222 (-) 297 WP_060400040.1 hypothetical protein -
  QHF92_RS12395 (QHF92_12395) - 2484550..2484684 (+) 135 WP_060398994.1 hypothetical protein -
  QHF92_RS12400 (QHF92_12400) - 2484757..2485875 (+) 1119 WP_060398995.1 NADH-dependent flavin oxidoreductase -
  QHF92_RS12405 (QHF92_12405) - 2486109..2486288 (-) 180 WP_060398996.1 hypothetical protein -
  QHF92_RS12410 (QHF92_12410) spo0A 2486430..2487233 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QHF92_RS12415 (QHF92_12415) spoIVB 2487509..2488789 (-) 1281 WP_003236887.1 SpoIVB peptidase -
  QHF92_RS12420 (QHF92_12420) recN 2488965..2490695 (-) 1731 WP_060398997.1 DNA repair protein RecN Machinery gene
  QHF92_RS12425 (QHF92_12425) argR 2490731..2491180 (-) 450 WP_003236889.1 arginine repressor ArgR -
  QHF92_RS12430 (QHF92_12430) - 2491278..2492123 (-) 846 WP_060398998.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=823724 QHF92_RS12410 WP_003226427.1 2486430..2487233(-) (spo0A) [Bacillus inaquosorum strain M3]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=823724 QHF92_RS12410 WP_003226427.1 2486430..2487233(-) (spo0A) [Bacillus inaquosorum strain M3]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGTGTAGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTGGATATTATTATGCCGCATTTGGACGGACTTGCTGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGACATATCCGTCAGGTCAGCGGAAATGCCAGCAGCGTGACGCACCGTGCGC
CCTCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCGGCGCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCGTGGAGCAGAGGAAACATTGACTCCATTTCCTCATTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGCGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1