Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QHF92_RS01960 Genome accession   NZ_CP123994
Coordinates   366320..366769 (-) Length   149 a.a.
NCBI ID   WP_133488530.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain M3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 361320..371769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS01925 (QHF92_01925) - 361867..362322 (+) 456 WP_060397894.1 RDD family protein -
  QHF92_RS01930 (QHF92_01930) - 362405..362737 (+) 333 WP_060397895.1 YckD family protein -
  QHF92_RS01935 (QHF92_01935) - 362854..363270 (+) 417 WP_104010211.1 MarR family transcriptional regulator -
  QHF92_RS01940 (QHF92_01940) - 363264..363605 (+) 342 WP_060397897.1 DUF3147 family protein -
  QHF92_RS01945 (QHF92_01945) - 363625..364353 (+) 729 WP_060397898.1 AAA family ATPase -
  QHF92_RS01950 (QHF92_01950) bglC 364425..365858 (+) 1434 WP_060397899.1 6-phospho-beta-glucosidase -
  QHF92_RS01955 (QHF92_01955) nin/comJ 365895..366293 (-) 399 WP_003241129.1 DNA-entry nuclease inhibitor Regulator
  QHF92_RS01960 (QHF92_01960) nucA/comI 366320..366769 (-) 450 WP_133488530.1 DNA-entry nuclease Machinery gene
  QHF92_RS01965 (QHF92_01965) tlpC 366944..368668 (-) 1725 WP_060397901.1 methyl-accepting chemotaxis protein TlpC -
  QHF92_RS01970 (QHF92_01970) hxlB 368780..369337 (-) 558 WP_003241122.1 6-phospho-3-hexuloisomerase -
  QHF92_RS01975 (QHF92_01975) hxlA 369343..369975 (-) 633 WP_060397902.1 3-hexulose-6-phosphate synthase -
  QHF92_RS01980 (QHF92_01980) hxlR 370207..370569 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16454.44 Da        Isoelectric Point: 4.4943

>NTDB_id=823693 QHF92_RS01960 WP_133488530.1 366320..366769(-) (nucA/comI) [Bacillus inaquosorum strain M3]
MNITMDIIKTILLVIVVIAAAAVSLIKGDFFSADQKTSQTKQYDETIAFPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=823693 QHF92_RS01960 WP_133488530.1 366320..366769(-) (nucA/comI) [Bacillus inaquosorum strain M3]
GTGAACATCACGATGGACATCATAAAAACGATACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCAGCCTGATAAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAACAATATGACGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCAAAACATATAAAGGATGCGATAAATGAGGGGCACTCAGATGTGTGTACCATCGACAGGGACGGAGCT
GAGGAACGCCGTGAGCAATCATTAAAAGACGTACCGCCTAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATATATTTCTCCCGCTGACAACCGCGGTGCAGGTTCTTGGGTCGGGCATC
AGCTTACCGATTACCCTGACGGCACAAAGGTTTTATTCACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

93.96

100

0.94