Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QHF92_RS00020 Genome accession   NZ_CP123994
Coordinates   3029..4141 (+) Length   370 a.a.
NCBI ID   WP_019257226.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain M3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS00005 (QHF92_00005) dnaA 1..1341 (+) 1341 WP_003236652.1 chromosomal replication initiator protein DnaA -
  QHF92_RS00010 (QHF92_00010) dnaN 1530..2666 (+) 1137 WP_003236654.1 DNA polymerase III subunit beta -
  QHF92_RS00015 (QHF92_00015) rlbA 2798..3013 (+) 216 WP_003236655.1 ribosome maturation protein RlbA -
  QHF92_RS00020 (QHF92_00020) recF 3029..4141 (+) 1113 WP_019257226.1 DNA replication/repair protein RecF Machinery gene
  QHF92_RS00025 (QHF92_00025) remB 4159..4404 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  QHF92_RS00030 (QHF92_00030) gyrB 4458..6374 (+) 1917 WP_003236659.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QHF92_RS00035 (QHF92_00035) gyrA 6584..9049 (+) 2466 WP_019257227.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42360.36 Da        Isoelectric Point: 7.0881

>NTDB_id=823686 QHF92_RS00020 WP_019257226.1 3029..4141(+) (recF) [Bacillus inaquosorum strain M3]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=823686 QHF92_RS00020 WP_019257226.1 3029..4141(+) (recF) [Bacillus inaquosorum strain M3]
TTGTATATCCAGAACTTAGAGCTGACATCTTACCGCAACTACGACCATGCCGAACTGCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAAACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATCATGTTTGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCTGTTTACCTGTATGACCTTTCTCTTTACCAGAAAATCCTTTCTCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTGACCGATCAGCTTGTGGA
AGTTGCGGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAAAAATGGGCGCAGCCAATTCATGCGGGCA
TCTCAAGAGGGTTAGAAGAGCTGACCCTAAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGTGTTACGCTGTCAGGGCCTCATCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCATTGT
CCCTTAAGCTGGCGGAAATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.189

100

0.992