Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   QE150_RS17300 Genome accession   NZ_CP123993
Coordinates   3490897..3491223 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Ab4294     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3485897..3496223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS17280 (QE150_17285) - 3485997..3486626 (-) 630 WP_000219967.1 FHA domain-containing protein -
  QE150_RS17285 (QE150_17290) gspD 3486667..3488943 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  QE150_RS17290 (QE150_17295) - 3488985..3489821 (-) 837 WP_000870031.1 type II secretion system protein N -
  QE150_RS17295 (QE150_17300) gspN 3489821..3490564 (-) 744 WP_000730343.1 type II secretion system protein N -
  QE150_RS17300 (QE150_17305) hns 3490897..3491223 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  QE150_RS17305 (QE150_17310) - 3491418..3491858 (-) 441 WP_000661569.1 thioesterase family protein -
  QE150_RS17310 (QE150_17315) - 3491866..3493059 (-) 1194 WP_000681780.1 membrane protein -
  QE150_RS17315 (QE150_17320) - 3493069..3493908 (-) 840 WP_109091000.1 hypothetical protein -
  QE150_RS17320 (QE150_17325) - 3493917..3494684 (-) 768 WP_270901282.1 uroporphyrinogen-III synthase -
  QE150_RS17325 (QE150_17330) hemC 3494689..3495606 (-) 918 WP_031946416.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=823677 QE150_RS17300 WP_000801427.1 3490897..3491223(-) (hns) [Acinetobacter baumannii strain Ab4294]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=823677 QE150_RS17300 WP_000801427.1 3490897..3491223(-) (hns) [Acinetobacter baumannii strain Ab4294]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1