Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   QE150_RS16130 Genome accession   NZ_CP123993
Coordinates   3238014..3238814 (-) Length   266 a.a.
NCBI ID   WP_212749990.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab4294     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3233014..3243814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS16110 (QE150_16115) - 3234079..3234777 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  QE150_RS16115 (QE150_16120) hisS 3234806..3236098 (-) 1293 WP_000095254.1 histidine--tRNA ligase -
  QE150_RS16120 (QE150_16125) ispG 3236095..3237210 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  QE150_RS16125 (QE150_16130) - 3237232..3238023 (-) 792 WP_000405164.1 RodZ domain-containing protein -
  QE150_RS16130 (QE150_16135) pilF 3238014..3238814 (-) 801 WP_212749990.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  QE150_RS16135 (QE150_16140) rlmN 3238830..3240062 (-) 1233 WP_032043679.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  QE150_RS16140 (QE150_16145) ndk 3240185..3240616 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  QE150_RS16145 (QE150_16150) iscX 3240730..3240930 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  QE150_RS16150 (QE150_16155) - 3241030..3241581 (-) 552 WP_000669565.1 phosphatase PAP2 family protein -
  QE150_RS16155 (QE150_16160) - 3241606..3242904 (-) 1299 WP_085940557.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30064.41 Da        Isoelectric Point: 9.2307

>NTDB_id=823669 QE150_RS16130 WP_212749990.1 3238014..3238814(-) (pilF) [Acinetobacter baumannii strain Ab4294]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRAVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=823669 QE150_RS16130 WP_212749990.1 3238014..3238814(-) (pilF) [Acinetobacter baumannii strain Ab4294]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCCCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCCTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTGCAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(149-207)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.624

100

0.996
  pilF Acinetobacter baylyi ADP1

73.846

97.744

0.722