Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   QE150_RS10730 Genome accession   NZ_CP123993
Coordinates   2095067..2095447 (-) Length   126 a.a.
NCBI ID   WP_270901656.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab4294     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2090067..2100447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS10700 (QE150_10700) tadA 2090186..2090689 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  QE150_RS10705 (QE150_10705) - 2090696..2091820 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  QE150_RS10710 (QE150_10710) ung 2091817..2092530 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  QE150_RS10715 (QE150_10715) - 2092581..2093177 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  QE150_RS10720 (QE150_10720) gspK 2093407..2094366 (-) 960 WP_270901658.1 type II secretion system minor pseudopilin GspK -
  QE150_RS10725 (QE150_10725) xcpW 2094366..2095067 (-) 702 WP_270901657.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QE150_RS10730 (QE150_10730) xcpV 2095067..2095447 (-) 381 WP_270901656.1 type II secretion system minor pseudopilin GspI Machinery gene
  QE150_RS10735 (QE150_10735) - 2095437..2095991 (-) 555 WP_000841367.1 type II secretion system protein -
  QE150_RS10740 (QE150_10740) - 2096001..2096609 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  QE150_RS10745 (QE150_10745) - 2096647..2097420 (-) 774 WP_000497301.1 TatD family hydrolase -
  QE150_RS10750 (QE150_10750) - 2097438..2097779 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  QE150_RS10755 (QE150_10755) - 2097791..2098771 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  QE150_RS10760 (QE150_10760) kdsB 2098783..2099544 (-) 762 WP_000680704.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13974.22 Da        Isoelectric Point: 10.0348

>NTDB_id=823660 QE150_RS10730 WP_270901656.1 2095067..2095447(-) (xcpV) [Acinetobacter baumannii strain Ab4294]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPNKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=823660 QE150_RS10730 WP_270901656.1 2095067..2095447(-) (xcpV) [Acinetobacter baumannii strain Ab4294]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGAATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992