Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QHG62_RS15410 Genome accession   NZ_CP123990
Coordinates   3180503..3182092 (+) Length   529 a.a.
NCBI ID   WP_281146505.1    Uniprot ID   -
Organism   Variovorax paradoxus strain MGMM5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3175503..3187092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG62_RS15385 (QHG62_15385) argS 3175568..3177253 (+) 1686 WP_281146500.1 arginine--tRNA ligase -
  QHG62_RS15390 (QHG62_15390) - 3177261..3178007 (+) 747 WP_281146501.1 SPOR domain-containing protein -
  QHG62_RS15395 (QHG62_15395) - 3178171..3178818 (+) 648 WP_281146502.1 thiol:disulfide interchange protein DsbA/DsbL -
  QHG62_RS15400 (QHG62_15400) lptA 3178972..3179694 (+) 723 WP_281146503.1 lipopolysaccharide transport periplasmic protein LptA -
  QHG62_RS15405 (QHG62_15405) lptB 3179691..3180485 (+) 795 WP_281146504.1 LPS export ABC transporter ATP-binding protein -
  QHG62_RS15410 (QHG62_15410) rpoN/rpoN1 3180503..3182092 (+) 1590 WP_281146505.1 RNA polymerase factor sigma-54 Machinery gene
  QHG62_RS15415 (QHG62_15415) - 3182102..3183706 (+) 1605 WP_281146506.1 phospholipase D family protein -
  QHG62_RS15420 (QHG62_15420) - 3183727..3184359 (-) 633 WP_281146507.1 YceI family protein -
  QHG62_RS15425 (QHG62_15425) - 3184419..3184997 (-) 579 WP_281146508.1 YceI family protein -
  QHG62_RS15430 (QHG62_15430) - 3184994..3185623 (-) 630 WP_281146509.1 cytochrome b/b6 domain-containing protein -
  QHG62_RS15435 (QHG62_15435) - 3185747..3186997 (+) 1251 WP_281146510.1 THUMP domain-containing protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58364.78 Da        Isoelectric Point: 4.7559

>NTDB_id=823621 QHG62_RS15410 WP_281146505.1 3180503..3182092(+) (rpoN/rpoN1) [Variovorax paradoxus strain MGMM5]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFGLDAVDTPAPRDEAAEAGEGE
FASLPASSATTPASETPTTEADTPAADIAEREPDWEGDGTVDMAPDDSEWGGDAPARQNNLGDDERADATELARSQESLQ
SFLHRQALSLRLNENDSAALRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDELVHHFQVALGLLQSLEPAGVGARDLG
ECLSIQLRALAGKDETEEQALVRKTAIAICKQPMELLARRDFKRLATLTRTNEDLVRSALQVISRLEPKPGRRFVDVERN
IVIPDVIVTKVGRGTNVKFRVMLNPEVMPRLRVHDIYAGALKSHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNAI
VERQKSYFVHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGNASSTAVRALIKQF
VSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=823621 QHG62_RS15410 WP_281146505.1 3180503..3182092(+) (rpoN/rpoN1) [Variovorax paradoxus strain MGMM5]
ATGAAGCAAGGGCTGTCCCTTCGCGTCTCGCAGCACCTGGCGCTCACGCCCCAGCTGCAGCAGTCGATCCGGCTGCTGCA
GCTTTCCACGCTCGAACTGAGCCAGGAAGTGGAGCAGATGCTCGACGAAAACCCGTTCCTCGAGCGCACCGCGGAAGAAG
CGGCGCGCGAGGAATTCGGGCTCGACGCCGTCGACACCCCGGCTCCGCGCGATGAAGCGGCGGAGGCCGGCGAAGGCGAA
TTCGCCTCGCTTCCGGCCAGCAGCGCGACCACCCCTGCGTCCGAAACCCCCACCACCGAGGCCGACACCCCCGCCGCCGA
CATTGCCGAGCGCGAGCCCGACTGGGAAGGCGACGGCACCGTCGACATGGCCCCGGACGACAGCGAGTGGGGCGGCGACG
CGCCCGCGCGGCAAAACAACCTTGGCGACGACGAGCGCGCCGACGCCACCGAACTCGCGCGCAGCCAGGAGTCGCTGCAG
TCCTTCCTGCACCGTCAGGCGCTCAGCCTGCGCCTGAACGAGAACGACAGTGCCGCGCTGCGCTTCCTGATCGAATCGCT
GAACGACGACGGCTACCTCGAAGATTCGCTGCCCGCCCTGGCCTCGGGCCTTGCAGGCGACGACAACGACCAGTTCGACG
AACTGGTCCACCACTTCCAGGTGGCGCTCGGCCTGCTCCAAAGCCTGGAGCCCGCCGGCGTCGGCGCGCGAGACTTGGGC
GAATGCCTGAGCATCCAGCTGCGCGCCCTGGCCGGCAAGGACGAAACCGAAGAGCAGGCGCTGGTCCGCAAGACCGCCAT
CGCCATCTGCAAGCAGCCGATGGAACTGCTCGCGCGGCGCGACTTCAAGCGCCTGGCCACGCTCACCCGCACCAACGAAG
ACCTGGTGCGCTCGGCGCTGCAGGTCATCTCGCGCCTCGAGCCCAAGCCGGGCCGCCGCTTTGTCGACGTCGAGCGCAAC
ATCGTGATTCCCGACGTCATCGTTACCAAGGTCGGCCGCGGCACCAACGTCAAGTTCCGCGTCATGCTCAACCCAGAGGT
CATGCCGCGCCTGCGCGTGCACGACATCTATGCCGGCGCGCTCAAGTCGCACAAGGGCGAAGGCAGCCAGGCCCTGTCGC
AGCGGCTGCAGGAAGCGCGCTGGTTCATCAAGAACATACAGCAGCGCTTCGACACCATCCTGCGCGTGAGCAATGCCATC
GTCGAGCGGCAGAAGAGCTACTTCGTGCACGGCGAGCTTGCCATGCGGCCGCTGGTGCTGCGCGAGATTGCCGACGAGCT
CGGCCTGCACGAATCGACCATCTCTCGCGTGACCACGGCCAAGTACATGGCCACGCCCTTCGGCACGGTCGAGCTCAAGT
ATTTCTTTGGCTCCGCGCTCGGCACCGAGACCGGCGGCAATGCGTCGAGCACCGCCGTGCGCGCGCTGATCAAGCAGTTC
GTGAGCTCCGAAAGCATCAAGAAGCCGCTGTCGGACAGCCAGATTTCCGAGATGCTGAAAGAGCAGGGCATCGAATGCGC
GCGGCGCACGGTGGCCAAGTACCGCGAAGCCCTGCGCATCGCCCCCGCCAACCTTCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(371-527)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(150-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.977

100

0.522