Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   R6I04_RS26240 Genome accession   NZ_CP137714
Coordinates   5687421..5687945 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa isolate FELIX_MS457     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5682421..5692945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I04_RS26225 aroB 5683537..5684643 (-) 1107 WP_003114574.1 3-dehydroquinate synthase -
  R6I04_RS26230 aroK 5684693..5685211 (-) 519 WP_003095833.1 shikimate kinase AroK -
  R6I04_RS26235 pilQ 5685223..5687367 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  R6I04_RS26240 comL/pilP 5687421..5687945 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  R6I04_RS26245 pilO 5687942..5688565 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  R6I04_RS26250 pilN 5688562..5689158 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  R6I04_RS26255 pilM 5689158..5690222 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  R6I04_RS26260 - 5690407..5692875 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=823609 R6I04_RS26240 WP_003095836.1 5687421..5687945(-) (comL/pilP) [Pseudomonas aeruginosa isolate FELIX_MS457]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=823609 R6I04_RS26240 WP_003095836.1 5687421..5687945(-) (comL/pilP) [Pseudomonas aeruginosa isolate FELIX_MS457]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362