Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QEP20_RS18180 Genome accession   NZ_CP123977
Coordinates   3506885..3508276 (-) Length   463 a.a.
NCBI ID   WP_029725993.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3501885..3513276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS18145 (QEP20_18145) flgL 3502056..3502952 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  QEP20_RS18150 (QEP20_18150) flgK 3502963..3504486 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  QEP20_RS18155 (QEP20_18155) flgN 3504505..3504987 (-) 483 WP_014481048.1 flagellar protein FlgN -
  QEP20_RS18160 (QEP20_18160) flgM 3505003..3505269 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  QEP20_RS18165 (QEP20_18165) yvyF 3505350..3505769 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QEP20_RS18170 (QEP20_18170) comFC 3505843..3506565 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  QEP20_RS18175 (QEP20_18175) comFB 3506529..3506825 (-) 297 WP_015483764.1 late competence protein ComFB -
  QEP20_RS18180 (QEP20_18180) comFA 3506885..3508276 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  QEP20_RS18185 (QEP20_18185) fakBA 3508382..3509227 (-) 846 WP_003227986.1 DegV family protein -
  QEP20_RS18190 (QEP20_18190) degU 3509325..3510014 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QEP20_RS18195 (QEP20_18195) degS 3510097..3511254 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QEP20_RS18200 (QEP20_18200) yvyE 3511471..3512124 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52575.62 Da        Isoelectric Point: 9.9619

>NTDB_id=823506 QEP20_RS18180 WP_029725993.1 3506885..3508276(-) (comFA) [Bacillus subtilis subsp. subtilis strain WH60A]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNKLAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=823506 QEP20_RS18180 WP_029725993.1 3506885..3508276(-) (comFA) [Bacillus subtilis subsp. subtilis strain WH60A]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCCTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATA
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.136

100

0.991