Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QEP20_RS14275 Genome accession   NZ_CP123977
Coordinates   2730484..2731236 (-) Length   250 a.a.
NCBI ID   WP_080010571.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2725484..2736236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS14250 (QEP20_14250) mreC 2725897..2726769 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  QEP20_RS14255 (QEP20_14255) mreB 2726800..2727813 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  QEP20_RS14260 (QEP20_14260) radC 2727905..2728600 (-) 696 WP_015251546.1 DNA repair protein RadC -
  QEP20_RS14265 (QEP20_14265) maf 2728637..2729206 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  QEP20_RS14270 (QEP20_14270) spoIIB 2729359..2730357 (-) 999 WP_003229644.1 stage II sporulation protein SpoIIB -
  QEP20_RS14275 (QEP20_14275) comC 2730484..2731236 (-) 753 WP_080010571.1 A24 family peptidase Machinery gene
  QEP20_RS14280 (QEP20_14280) folC 2731376..2732668 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QEP20_RS14285 (QEP20_14285) valS 2732728..2735370 (-) 2643 WP_003229639.1 valine--tRNA ligase -
  QEP20_RS14290 (QEP20_14290) - 2735818..2736009 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26673.27 Da        Isoelectric Point: 9.4398

>NTDB_id=823495 QEP20_RS14275 WP_080010571.1 2730484..2731236(-) (comC) [Bacillus subtilis subsp. subtilis strain WH60A]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAMAAGSILAYLYGDSIIS
FYIKMALADC

Nucleotide


Download         Length: 753 bp        

>NTDB_id=823495 QEP20_RS14275 WP_080010571.1 2730484..2731236(-) (comC) [Bacillus subtilis subsp. subtilis strain WH60A]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATGGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGCTGACTGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.19

98.8

0.98