Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QEP20_RS12165 Genome accession   NZ_CP123977
Coordinates   2374626..2375429 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2369626..2380429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS12140 (QEP20_12140) glpQ 2370773..2371504 (-) 732 WP_069703866.1 glycerophosphodiester phosphodiesterase -
  QEP20_RS12145 (QEP20_12145) yqiI 2371583..2372203 (-) 621 WP_080477816.1 N-acetylmuramoyl-L-alanine amidase -
  QEP20_RS12150 (QEP20_12150) yqiH 2372218..2372511 (-) 294 WP_003230284.1 lipoprotein -
  QEP20_RS12155 (QEP20_12155) - 2372819..2372971 (+) 153 WP_014480226.1 hypothetical protein -
  QEP20_RS12160 (QEP20_12160) yqiG 2373044..2374162 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  QEP20_RS12165 (QEP20_12165) spo0A 2374626..2375429 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QEP20_RS12170 (QEP20_12170) spoIVB 2375705..2376985 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  QEP20_RS12175 (QEP20_12175) recN 2377159..2378889 (-) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  QEP20_RS12180 (QEP20_12180) argR 2378926..2379375 (-) 450 WP_003230265.1 arginine repressor ArgR -
  QEP20_RS12185 (QEP20_12185) yqxC 2379473..2380318 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=823476 QEP20_RS12165 WP_003226427.1 2374626..2375429(-) (spo0A) [Bacillus subtilis subsp. subtilis strain WH60A]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=823476 QEP20_RS12165 WP_003226427.1 2374626..2375429(-) (spo0A) [Bacillus subtilis subsp. subtilis strain WH60A]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1