Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QEP20_RS05650 Genome accession   NZ_CP123977
Coordinates   1093014..1093592 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain WH60A     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088014..1098592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP20_RS05630 (QEP20_05630) hemAT 1088525..1089823 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  QEP20_RS05635 (QEP20_05635) yhfW 1089962..1091491 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  QEP20_RS05640 (QEP20_05640) yhxC 1091603..1092460 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  QEP20_RS05645 (QEP20_05645) yhzC 1092488..1092721 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  QEP20_RS05650 (QEP20_05650) comK 1093014..1093592 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  QEP20_RS05655 (QEP20_05655) yhxD 1093639..1094538 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  QEP20_RS05660 (QEP20_05660) yhjA 1094755..1095024 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  QEP20_RS05665 (QEP20_05665) yhjB 1095068..1096537 (-) 1470 WP_029726292.1 sodium:solute symporter -
  QEP20_RS05670 (QEP20_05670) yhjC 1096534..1096734 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QEP20_RS05675 (QEP20_05675) - 1096942..1097304 (-) 363 WP_003233132.1 hypothetical protein -
  QEP20_RS05680 (QEP20_05680) yhjE 1097456..1098079 (+) 624 WP_010886465.1 VTT domain-containing protein -
  QEP20_RS05685 (QEP20_05685) lepB 1098081..1098587 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=823456 QEP20_RS05650 WP_029317573.1 1093014..1093592(+) (comK) [Bacillus subtilis subsp. subtilis strain WH60A]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=823456 QEP20_RS05650 WP_029317573.1 1093014..1093592(+) (comK) [Bacillus subtilis subsp. subtilis strain WH60A]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995