Detailed information NTG0823429

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: QFE45_RS08865
• Genome accession: NZ_CP123971
• Coordinates: 1828300..1829130 (-)
• Length: 276 a.a.
• NCBI ID: WP_003709392.1
• Uniprot ID: -
• Organism: Ligilactobacillus salivarius strain ZSA5
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1829453..1830625	1828300..1829130	flank	323

Gene organization within MGE regions

Location: 1828300..1830625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFE45_RS08865 (QFE45_08865)	endA	1828300..1829130 (-)	831	WP_003709392.1	DNA/RNA non-specific endonuclease	Machinery gene
QFE45_RS08870 (QFE45_08870)	-	1829453..1830625 (+)	1173	WP_002323245.1	IS256-like element IS1542 family transposase	-

Sequence

Protein

• Length: 276 a.a.
• Molecular weight: 30410.73 Da
• Isoelectric Point: 10.4970

>NTDB_id=823429 QFE45_RS08865 WP_003709392.1 1828300..1829130(-) (endA) [Ligilactobacillus salivarius strain ZSA5]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide

• Length: 831 bp

>NTDB_id=823429 QFE45_RS08865 WP_003709392.1 1828300..1829130(-) (endA) [Ligilactobacillus salivarius strain ZSA5]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGGCGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACCTGCCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCCCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (83-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	60.538	80.797	0.489
endA	Streptococcus pneumoniae D39	60.538	80.797	0.489
endA	Streptococcus pneumoniae R6	60.538	80.797	0.489
endA	Streptococcus pneumoniae TIGR4	60.538	80.797	0.489