Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QFE45_RS02985 Genome accession   NZ_CP123971
Coordinates   601965..603632 (+) Length   555 a.a.
NCBI ID   WP_284650480.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain ZSA5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 596965..608632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFE45_RS02955 (QFE45_02955) folD 597347..598204 (+) 858 WP_034982366.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  QFE45_RS02960 (QFE45_02960) xseA 598197..599537 (+) 1341 WP_034982367.1 exodeoxyribonuclease VII large subunit -
  QFE45_RS02965 (QFE45_02965) - 599537..599764 (+) 228 WP_003699848.1 exodeoxyribonuclease VII small subunit -
  QFE45_RS02970 (QFE45_02970) - 599730..600647 (+) 918 WP_003699850.1 polyprenyl synthetase family protein -
  QFE45_RS02975 (QFE45_02975) - 600650..601477 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  QFE45_RS02980 (QFE45_02980) - 601502..601960 (+) 459 WP_003699854.1 ArgR family transcriptional regulator -
  QFE45_RS02985 (QFE45_02985) recN 601965..603632 (+) 1668 WP_284650480.1 DNA repair protein RecN Machinery gene
  QFE45_RS02990 (QFE45_02990) lexA 603696..604316 (-) 621 WP_003699857.1 transcriptional repressor LexA -
  QFE45_RS02995 (QFE45_02995) - 604463..604717 (+) 255 WP_003704077.1 DUF896 domain-containing protein -
  QFE45_RS03000 (QFE45_03000) - 604844..605068 (+) 225 WP_003705934.1 YneF family protein -
  QFE45_RS03005 (QFE45_03005) yihA 605151..605741 (+) 591 WP_003699861.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QFE45_RS03010 (QFE45_03010) - 605759..606058 (+) 300 WP_284650481.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  QFE45_RS03015 (QFE45_03015) - 606162..607976 (+) 1815 WP_284650482.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63221.97 Da        Isoelectric Point: 4.8501

>NTDB_id=823416 QFE45_RS02985 WP_284650480.1 601965..603632(+) (recN) [Ligilactobacillus salivarius strain ZSA5]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSQLRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIEKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKCLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAVIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=823416 QFE45_RS02985 WP_284650480.1 601965..603632(+) (recN) [Ligilactobacillus salivarius strain ZSA5]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTATTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAACCATATAGATTTGTTAGATGAATATGATAAAAAAACATCCCAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTAAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAAAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGCCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAATGAAATAGAGGAAAGATTAGAGTTGATCCACCAATTGAAGAGAAAATATGGTGATACAATA
GAGGATATTTTGCATTATCATAGTAGAATTGAAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATGTTTAAAT
AATTCTAAATTGTATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGTATTACTCACTTGCCGCAAGTTGCAGTAATTGCAGACAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGAACAGAAACTTCATTAAAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.252

100

0.497