Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   R6I06_RS03770 Genome accession   NZ_CP137711
Coordinates   722452..723582 (+) Length   376 a.a.
NCBI ID   WP_003243267.1    Uniprot ID   Q59HN8
Organism   Bacillus subtilis isolate FELIX_MS886     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 717452..728582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I06_RS03745 (R6I06_03745) - 717754..718059 (-) 306 WP_003242885.1 hypothetical protein -
  R6I06_RS03750 (R6I06_03750) yezA 718126..718332 (-) 207 WP_003233877.1 bacteriocin immunity protein -
  R6I06_RS03755 (R6I06_03755) atxF 718572..719027 (-) 456 WP_010886434.1 TIGR01741 family protein -
  R6I06_RS03760 (R6I06_03760) yeeF 719047..721056 (-) 2010 WP_003242909.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  R6I06_RS03765 (R6I06_03765) - 721268..722290 (+) 1023 WP_003243884.1 hypothetical protein -
  R6I06_RS03770 (R6I06_03770) rapC 722452..723582 (+) 1131 WP_003243267.1 response regulator aspartate phosphatase RapH Regulator
  R6I06_RS03775 (R6I06_03775) phrH 723572..723745 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  R6I06_RS03780 (R6I06_03780) yeeI 723905..724624 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R6I06_RS03785 (R6I06_03785) yeeK 724758..725195 (+) 438 WP_003244206.1 spore coat protein YeeK -
  R6I06_RS03790 (R6I06_03790) yezE 725310..725894 (+) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  R6I06_RS03795 (R6I06_03795) yesE 725973..726416 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  R6I06_RS03800 (R6I06_03800) yesF 726413..727273 (+) 861 WP_003243852.1 NAD-dependent epimerase/dehydratase family protein -
  R6I06_RS03805 (R6I06_03805) cotJA 727400..727648 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  R6I06_RS03810 (R6I06_03810) cotJB 727632..727895 (+) 264 WP_003219491.1 spore coat protein CotJB -
  R6I06_RS03815 (R6I06_03815) cotJC 727910..728479 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44003.32 Da        Isoelectric Point: 5.7372

>NTDB_id=823403 R6I06_RS03770 WP_003243267.1 722452..723582(+) (rapC) [Bacillus subtilis isolate FELIX_MS886]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=823403 R6I06_RS03770 WP_003243267.1 722452..723582(+) (rapC) [Bacillus subtilis isolate FELIX_MS886]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATCGAGACCCCTCAGAAAAAACTCACAGGTCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCGGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGTAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3Q15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402