Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   R6I06_RS02300 Genome accession   NZ_CP137711
Coordinates   447557..447991 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis isolate FELIX_MS886     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 442557..452991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I06_RS02270 (R6I06_02270) ydaD 443207..444067 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  R6I06_RS02275 (R6I06_02275) lyxE 444083..444586 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  R6I06_RS02280 (R6I06_02280) ydaF 444672..445223 (+) 552 WP_003246691.1 GNAT family N-acetyltransferase -
  R6I06_RS02285 (R6I06_02285) ydaG 445301..445723 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  R6I06_RS02290 (R6I06_02290) amj 446229..447038 (+) 810 WP_003234394.1 lipid II flippase Amj -
  R6I06_RS02295 (R6I06_02295) ydzA 447082..447372 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  R6I06_RS02300 (R6I06_02300) lrpC 447557..447991 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  R6I06_RS02305 (R6I06_02305) topB 448056..450239 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  R6I06_RS02310 (R6I06_02310) ephJ 450442..451530 (+) 1089 WP_003246551.1 lipoprotein -
  R6I06_RS02315 (R6I06_02315) epsK 451511..452362 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=823394 R6I06_RS02300 WP_003246585.1 447557..447991(+) (lrpC) [Bacillus subtilis isolate FELIX_MS886]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=823394 R6I06_RS02300 WP_003246585.1 447557..447991(+) (lrpC) [Bacillus subtilis isolate FELIX_MS886]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1