Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   QGO80_RS03300 Genome accession   NZ_CP123969
Coordinates   605786..605974 (+) Length   62 a.a.
NCBI ID   WP_000027835.1    Uniprot ID   A0AAV3JNT7
Organism   Streptococcus agalactiae strain CS2108     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 604740..605351 605786..605974 flank 435


Gene organization within MGE regions


Location: 604740..605974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGO80_RS03290 (QGO80_03290) - 604740..605387 (-) 648 Protein_562 IS3 family transposase -
  QGO80_RS03295 (QGO80_03295) - 605565..605744 (+) 180 WP_000076709.1 CsbD family protein -
  QGO80_RS03300 (QGO80_03300) prx 605786..605974 (+) 189 WP_000027835.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7180.25 Da        Isoelectric Point: 4.7815

>NTDB_id=823376 QGO80_RS03300 WP_000027835.1 605786..605974(+) (prx) [Streptococcus agalactiae strain CS2108]
MSIRTDIDEFKEAIDKGYISGNTVAIVRKNGKIFDYVLLHEEVREEEVVTVERVLDVLRKLS

Nucleotide


Download         Length: 189 bp        

>NTDB_id=823376 QGO80_RS03300 WP_000027835.1 605786..605974(+) (prx) [Streptococcus agalactiae strain CS2108]
TTGTCTATCAGAACAGATATAGATGAGTTTAAAGAAGCGATTGATAAAGGCTATATTTCAGGGAACACAGTAGCGATAGT
GCGTAAAAACGGAAAGATATTTGATTATGTGTTACTACACGAAGAAGTGAGAGAAGAAGAGGTTGTTACAGTTGAGAGAG
TGCTTGATGTACTGAGGAAGTTATCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

72.222

87.097

0.629
  prx Streptococcus pyogenes MGAS8232

69.091

88.71

0.613
  prx Streptococcus pyogenes MGAS315

66.667

87.097

0.581
  prx Streptococcus pyogenes MGAS315

85

64.516

0.548
  prx Streptococcus pyogenes MGAS315

61.818

88.71

0.548
  prx Streptococcus pyogenes MGAS315

74.359

62.903

0.468
  prx Streptococcus pyogenes MGAS315

78.378

59.677

0.468