Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QH639_RS17170 Genome accession   NZ_CP123966
Coordinates   3327876..3329252 (+) Length   458 a.a.
NCBI ID   WP_281114854.1    Uniprot ID   -
Organism   Lysinibacillus sp.     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3322876..3334252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QH639_RS17150 (QH639_17150) - 3323218..3323688 (+) 471 WP_004233573.1 CtsR family transcriptional regulator -
  QH639_RS17155 (QH639_17155) - 3323702..3324244 (+) 543 WP_004233574.1 UvrB/UvrC motif-containing protein -
  QH639_RS17160 (QH639_17160) - 3324241..3325350 (+) 1110 WP_131521806.1 protein arginine kinase -
  QH639_RS17165 (QH639_17165) - 3325340..3327784 (+) 2445 WP_016992144.1 ATP-dependent Clp protease ATP-binding subunit -
  QH639_RS17170 (QH639_17170) radA 3327876..3329252 (+) 1377 WP_281114854.1 DNA repair protein RadA Machinery gene
  QH639_RS17175 (QH639_17175) - 3329535..3330620 (+) 1086 WP_131521807.1 PIN/TRAM domain-containing protein -
  QH639_RS17180 (QH639_17180) ispD 3330632..3331327 (+) 696 WP_131521808.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QH639_RS17185 (QH639_17185) epsC 3331630..3332571 (+) 942 WP_131521809.1 serine O-acetyltransferase EpsC -
  QH639_RS17190 (QH639_17190) ispF 3332713..3333189 (+) 477 WP_131521810.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50187.96 Da        Isoelectric Point: 7.3825

>NTDB_id=823335 QH639_RS17170 WP_281114854.1 3327876..3329252(+) (radA) [Lysinibacillus sp.]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKAIPINQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIDEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPSSNIGGWEFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=823335 QH639_RS17170 WP_281114854.1 3327876..3329252(+) (radA) [Lysinibacillus sp.]
TTGGCAAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAATCTGCTAAATGGATGGGAAGATGCCCTGGGTG
TGGTGAATGGAATAAAATGGTGGAAGAAGTAGAAATGGTTGCTAAAGGTCCACGTGGAGCTTTTCAACATTCTGCTACAG
TTACTCAAAAGGCAATCCCGATTAACCAAGTGGAAGCTACTGAAGAATCGCGTGTAGCAACAGAAATGGGCGAACTCAAT
CGCGTATTAGGCGGTGGCATTGTACCTGGTTCTCTAGTATTAATTGGGGGCGATCCTGGAATAGGGAAATCAACATTACT
ATTACAGGTCTCCGCATTACTCTCGAATAAAGGGCATCGCGTACTTTATATATCTGGAGAGGAATCTATTCGTCAAACGA
AATTACGAGCAGAGCGTTTAGGAGTGATTTCTCAAGAGCTTTACATATACTCCGAAACAAACCTAGAGTTTTTAAACCAA
ACTATTGATGAAGTACAACCTAAATTTGTCATTGTCGATTCCATACAAACCGTCTTTCATCCAGAAGTAACAAGCGCCCC
AGGTAGTGTCTCACAGGTTCGTGAATGTACAGCTGAGCTGATGCGAATCGCTAAAACAAAAGGCATTGCTATTTTTCTAG
TAGGACATGTCACAAAAGAGGGACAAATTGCAGGGCCACGTATTTTAGAGCATATGGTGGATACTGTACTGTACTTTGAA
GGGGAGAGACATCATAATCATCGTATTTTAAGAAGCCAAAAAAACCGATTCGGATCTACAAATGAAATTGCTATATTTGA
AATGCTTCAAGGTGGGTTAAAGGAAGTGCTAAACCCTTCTGAGTTATTTTTACAGGAGCGGTCACAAGGTGCGGCGGGGT
CAACTATTGTAGCCTCAATGGAGGGGACAAGGCCAATTCTTGTTGAAATTCAATCCTTAGTTACGCCTACAAGCTTTAAC
TATCCTAAACGTATGGCCACAGGTGTCGATCAAAATCGAGTACAATTGCTAATGGCTGTACTAGAAAAGCGTATGGGTCT
CATGCTACAAGCTCAGGATGCATATATTAAAGTTGCTGGTGGTGTCAAGCTGGATGAGCCAGCAATAGATTTAGCGGTGT
TGACAAGCATTGTATCTAGTTTTAAGGATCAGGCAGTGCGTGCAACGGATTGCTTTATTGGTGAGGTCGGACTGACAGGT
GAGGTCCGTCGGGTATCACGTATAGAACAGCGAGTCATTGAAGCGGCGAAGCTTGGATTTAAAAGAGCTTTCATTCCTTC
TTCGAATATTGGTGGTTGGGAATTTCCGCAGGGAATTGAAATTGTTGGTGTAGAAACGATTAAAGATGCACTAAATGCAT
GCTTTAGAGAGTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

AAA domain (AAA_25)

(65-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.705

99.127

0.701
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62