Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QH639_RS09840 Genome accession   NZ_CP123966
Coordinates   1937095..1938786 (-) Length   563 a.a.
NCBI ID   WP_131522461.1    Uniprot ID   -
Organism   Lysinibacillus sp.     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1932095..1943786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QH639_RS09820 (QH639_09820) - 1932516..1934087 (-) 1572 WP_131521576.1 FapA family protein -
  QH639_RS09825 (QH639_09825) - 1934365..1934544 (-) 180 WP_131521577.1 hypothetical protein -
  QH639_RS09830 (QH639_09830) spo0A 1934850..1935641 (-) 792 WP_016993890.1 sporulation transcription factor Spo0A -
  QH639_RS09835 (QH639_09835) - 1936026..1936973 (-) 948 WP_009370207.1 SpoIVB peptidase S55 domain-containing protein -
  QH639_RS09840 (QH639_09840) recN 1937095..1938786 (-) 1692 WP_131522461.1 DNA repair protein RecN Machinery gene
  QH639_RS09845 (QH639_09845) argR 1938820..1939269 (-) 450 WP_004231170.1 transcriptional regulator ArgR -
  QH639_RS09850 (QH639_09850) - 1939370..1940188 (-) 819 WP_131522460.1 TlyA family RNA methyltransferase -
  QH639_RS09855 (QH639_09855) dxs 1940188..1942089 (-) 1902 WP_048392297.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QH639_RS09860 (QH639_09860) - 1942253..1943134 (-) 882 WP_131522458.1 polyprenyl synthetase family protein -
  QH639_RS09865 (QH639_09865) xseB 1943138..1943371 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63439.20 Da        Isoelectric Point: 4.6214

>NTDB_id=823321 QH639_RS09840 WP_131522461.1 1937095..1938786(-) (recN) [Lysinibacillus sp.]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSAHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KNYRSQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQTLKRKYGTT
VEEILAYYEKIKNELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=823321 QH639_RS09840 WP_131522461.1 1937095..1938786(-) (recN) [Lysinibacillus sp.]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCTATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACTGGGGAAACAGGTGCCGGGAAATCCATTATCATTGATGCGGTGCATTTACTTGCAGGTGGACGAGGCAACACTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGCTCATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACAATTATTTTACGTCGTGATTTGAATGATACTGGTAAGAGTATTTG
CCGAGTGAATGGTAAGCTTGTGCCTTTATCGGTACTAAGAGACATTGGGGCAAGTCTCATTGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAACAGCACATCAATTTGCTGGATCAGTTTGCAGAAGAAGAGCTGTCGCCAATTCAA
AAAAACTATCGTTCCCAATACGATGAATACCGTTTGCTCAAAAAAGACTTAGCTTCTATATCCATTGATGAGCAGTTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATTAAAGAGTTGGACGAAGCTAATTTAAAGTTAGGTGAAGAAGACGAGC
TTCTAGATGAACGCCGTCGTTTGATGAATTTTAACAAAATTTTTGAACGTTCTAGTGCAGCCTATGAAGCCATTCAGGGT
GAAACAAAAGGGCTTGATTGGATTGGAACGGCAATGGGTGCTTTAGAAGATGCTGCGACGGTTGATGAGCAATTCAAAGA
GTCATCTGAGGCAGTGACAACTGCGTTTTATGCATTACAGGATGCAGCCTATCAGGTAAAAAATGTGTTAGATGAATTAG
AATTTGACCCTGCACGTTTAAACGAAGTTGAGCAACGTTTAGCGCTGTTGCAAACTTTAAAACGCAAATATGGTACGACA
GTGGAAGAGATCTTGGCTTATTATGAAAAAATTAAAAACGAGTTAAATGAGCTGTTGAATCGTGATGAGATTTTGCAGGT
GAAAGAACGACGTGTGTTAGAGATGGAAGCTGTACTCAATGAGCTGGCTAGTGAACTTTCAACTGTACGTAAAGCTGCAG
CTCAACAATTGAGTGAAGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCCTATTTCGATGCCAATGGGAAAGATCAAATTATCTTCTACATTTCCACAAACGTTGGGGAACCACCAAAGTC
TTTACCGAAAATTGCATCAGGTGGAGAATTATCACGAATGATGCTAGCGTTGAAAACGATTTTCTCTTCTTCCAATGGAA
TTACTTCCATTATATTTGATGAGGTGGATACAGGTGTCAGTGGTCGTGTTGCGCAAGCGATTGCAGAGAAAATTGCCGCA
ATTTCTGTTAATTCTCAAGTTTTATGTATTTCACATTTACCTCAAGTTGCAGCGATGGCTGATCATCATTACTTCATCAA
AAAAGAAGTCGAGCATGATCGAACGTTTACTTCCTTATCAGAAATTGATCAAGATGCTCGTATAGAGGAAGTTAGCCGTA
TGATGTCCGGAACAGAAATTACAGCTTTGACACTACAGCATGCCACGGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.34

100

0.536