Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QH639_RS05415 Genome accession   NZ_CP123966
Coordinates   1023206..1024156 (-) Length   316 a.a.
NCBI ID   WP_131520885.1    Uniprot ID   -
Organism   Lysinibacillus sp.     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1018206..1029156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QH639_RS05380 (QH639_05380) - 1018446..1018775 (+) 330 WP_069904044.1 phage tail protein -
  QH639_RS05385 (QH639_05385) - 1018775..1019473 (+) 699 WP_281115766.1 phage minor tail protein L -
  QH639_RS05390 (QH639_05390) - 1019478..1019861 (+) 384 Protein_1022 C40 family peptidase -
  QH639_RS05395 (QH639_05395) - 1020097..1020411 (-) 315 WP_237898801.1 antibiotic biosynthesis monooxygenase -
  QH639_RS05400 (QH639_05400) - 1020413..1021438 (-) 1026 WP_131520882.1 siderophore ABC transporter substrate-binding protein -
  QH639_RS05405 (QH639_05405) - 1021502..1022263 (-) 762 WP_131520883.1 ABC transporter ATP-binding protein -
  QH639_RS05410 (QH639_05410) - 1022260..1023213 (-) 954 WP_131520884.1 iron chelate uptake ABC transporter family permease subunit -
  QH639_RS05415 (QH639_05415) ceuB 1023206..1024156 (-) 951 WP_131520885.1 ABC transporter permease Machinery gene
  QH639_RS05420 (QH639_05420) - 1024441..1025493 (-) 1053 WP_131520886.1 hypothetical protein -
  QH639_RS05425 (QH639_05425) menC 1025545..1026651 (-) 1107 WP_131520887.1 o-succinylbenzoate synthase -
  QH639_RS05430 (QH639_05430) - 1026673..1027497 (-) 825 WP_131520888.1 GNAT family N-acetyltransferase -
  QH639_RS05435 (QH639_05435) - 1027497..1028642 (-) 1146 WP_131520889.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34796.00 Da        Isoelectric Point: 10.1980

>NTDB_id=823314 QH639_RS05415 WP_131520885.1 1023206..1024156(-) (ceuB) [Lysinibacillus sp.]
MKIRYLLTATVLLSIVSLFIGVVDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFSNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=823314 QH639_RS05415 WP_131520885.1 1023206..1024156(-) (ceuB) [Lysinibacillus sp.]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTTTGCTGTCTATTGTGTCGCTATTTATCGGAGTAGTTGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAGGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCAATCTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTTTCACCAACAACAGCT
GGTACATTAGATGCCACACGGTTGGGTGTATTGATTTCCATGATGTTCTTTTCGAACGTTACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTACTATTTATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATTTTGTCCTCTGTTACAACATTTTTTGCATATAAGGCGAATATCATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTTTCATTAATCATGAAAGGCCGTTACGAACTGTTATATGTAAGTGTACC
AATACTCATTTTAGCTTATATTTACGCAAATCGTTTTACAGTAGCTGGGATGGGGGAGGATTTTGCAAAAAATCTTGGTC
TATCCTATAAATTTGTAGTCAATTTAGGCTTGGTGTTGGTAGCTCTTATCTCCACGACAGTGGTGTTAACAGTCGGTATC
ATTCCATTCCTTGGTTTGATTATTCCGAACATTATTTCCCTGTTCAAAGGTGATAATTTGGCAAAAACCTTGCCGCACAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGTGATATTTTAGGACGAGTACTGATTTTCCCTTATGAAATACCAATAA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528