Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R6I05_RS14100 Genome accession   NZ_CP137705
Coordinates   2882892..2883521 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli isolate FELIX_MS724     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2877892..2888521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I05_RS14085 (R6I05_14085) helD 2878134..2880188 (-) 2055 WP_001295354.1 DNA helicase IV -
  R6I05_RS14090 (R6I05_14090) yccF 2880311..2880757 (+) 447 WP_001261235.1 YccF domain-containing protein -
  R6I05_RS14095 (R6I05_14095) yccS 2880767..2882929 (+) 2163 WP_000875058.1 YccS family putative transporter -
  R6I05_RS14100 (R6I05_14100) sxy/tfoX 2882892..2883521 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  R6I05_RS14105 (R6I05_14105) sulA 2883740..2884249 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  R6I05_RS14110 (R6I05_14110) ompA 2884606..2885646 (+) 1041 WP_000750416.1 porin OmpA -
  R6I05_RS14115 (R6I05_14115) matP 2885722..2886174 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  R6I05_RS14120 (R6I05_14120) ycbZ 2886360..2888120 (+) 1761 WP_000152888.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=823259 R6I05_RS14100 WP_000839153.1 2882892..2883521(-) (sxy/tfoX) [Escherichia coli isolate FELIX_MS724]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=823259 R6I05_RS14100 WP_000839153.1 2882892..2883521(-) (sxy/tfoX) [Escherichia coli isolate FELIX_MS724]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1