Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R8586_RS05850 Genome accession   NZ_AP026922
Coordinates   1133826..1135493 (-) Length   555 a.a.
NCBI ID   WP_000923596.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1128826..1140493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8586_RS05820 - 1129110..1129913 (-) 804 Protein_1154 IS5 family transposase -
  R8586_RS05825 (PC0038_11570) - 1129921..1130223 (-) 303 WP_000590570.1 PTS sugar transporter subunit IIB -
  R8586_RS05830 (PC0038_11580) - 1130261..1130737 (-) 477 Protein_1156 PTS sugar transporter subunit IIA -
  R8586_RS05835 (PC0038_11590) - 1130918..1131115 (+) 198 WP_000693247.1 hypothetical protein -
  R8586_RS05840 (PC0038_11600) lepA 1131194..1133017 (-) 1824 WP_001047212.1 translation elongation factor 4 -
  R8586_RS05845 (PC0038_11610) - 1133096..1133824 (-) 729 WP_000133334.1 metallophosphoesterase family protein -
  R8586_RS05850 (PC0038_11620) recN 1133826..1135493 (-) 1668 WP_000923596.1 DNA repair protein RecN Machinery gene
  R8586_RS05855 (PC0038_11630) - 1135500..1135931 (-) 432 WP_001034415.1 arginine repressor -
  R8586_RS05860 (PC0038_11640) - 1135924..1136739 (-) 816 WP_001041081.1 TlyA family RNA methyltransferase -
  R8586_RS05865 (PC0038_11650) - 1136732..1137607 (-) 876 WP_000743832.1 polyprenyl synthetase family protein -
  R8586_RS05870 (PC0038_11660) - 1137604..1137816 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R8586_RS05875 (PC0038_11670) xseA 1137794..1139134 (-) 1341 WP_000417462.1 exodeoxyribonuclease VII large subunit -
  R8586_RS05880 (PC0038_11680) udk 1139262..1139900 (-) 639 WP_001181378.1 uridine kinase -
  R8586_RS05885 (PC0038_11690) - 1140008..1140283 (-) 276 WP_000436713.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62865.32 Da        Isoelectric Point: 4.6798

>NTDB_id=82313 R8586_RS05850 WP_000923596.1 1133826..1135493(-) (recN) [Streptococcus pneumoniae strain PZ900700038]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRTIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=82313 R8586_RS05850 WP_000923596.1 1133826..1135493(-) (recN) [Streptococcus pneumoniae strain PZ900700038]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAACTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCAAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment