Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   R8586_RS05620 Genome accession   NZ_AP026922
Coordinates   1075514..1078789 (+) Length   1091 a.a.
NCBI ID   WP_000772351.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1070514..1083789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8586_RS05580 (PC0038_11090) - 1071213..1071386 (+) 174 WP_000138312.1 hypothetical protein -
  R8586_RS05585 (PC0038_11100) - 1071476..1072081 (+) 606 WP_000144752.1 hypothetical protein -
  R8586_RS05590 (PC0038_11110) - 1072125..1072553 (+) 429 WP_000918209.1 hypothetical protein -
  R8586_RS05595 (PC0038_11120) - 1072495..1072872 (+) 378 WP_001233892.1 hypothetical protein -
  R8586_RS05600 (PC0038_11130) - 1072890..1073300 (+) 411 WP_001124848.1 hypothetical protein -
  R8586_RS05605 - 1073792..1074238 (-) 447 WP_001818857.1 tyrosine-type recombinase/integrase -
  R8586_RS05610 - 1074138..1074988 (-) 851 Protein_1111 IS630 family transposase -
  R8586_RS05615 - 1075159..1075314 (+) 156 Protein_1112 diacylglycerol kinase family lipid kinase -
  R8586_RS05620 (PC0038_11160) rexB 1075514..1078789 (+) 3276 WP_000772351.1 ATP-dependent nuclease subunit B Machinery gene
  R8586_RS05625 (PC0038_11170) rexA 1078786..1082436 (+) 3651 WP_000767233.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  R8586_RS05630 (PC0038_11180) - 1082606..1083784 (+) 1179 WP_000174788.1 hypothetical protein -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124826.69 Da        Isoelectric Point: 5.7504

>NTDB_id=82308 R8586_RS05620 WP_000772351.1 1075514..1078789(+) (rexB) [Streptococcus pneumoniae strain PZ900700038]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFSITVTRFAQMARYLVLNDLPVKTT
LDDIGLGLAFYKCLAELDPKDLRVYGAIKQDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHGKGVEIVIGAYASKKAYTSPFSEGNLYQAS
VKFLHHLASKYQTPAQDCSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
ENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILALKRYRFRQEDLINLLRTDLYTDL
SQSDIDAFEQYIRYLGINGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEGAVTK
QLQDLTTTLEAVEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQTTEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESE
SKESAYLQELIHFGFRRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQGLENP
AIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPN
EDSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSV
FVRGKVDRIDRLKANGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKESSYLGEFYNKNKANQLTDEEFQLLLDYNAYLYKKAAEKILAGRFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWLEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=82308 R8586_RS05620 WP_000772351.1 1075514..1078789(+) (rexB) [Streptococcus pneumoniae strain PZ900700038]
ATGAAATTACTTTATACTGATATTCGAACTTCTTTGACAGAAATTCTAACAAGAGAGGCAGAAGAGCTAGTTGCAGCTGG
CAAGCGGGTCTTCTACATTGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTTCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTATCTGGTCTTGAATGATTTACCAGTTAAAACTACT
CTTGATGATATCGGTCTTGGGTTGGCCTTTTACAAATGCCTTGCCGAACTCGATCCCAAGGACTTGCGTGTTTATGGCGC
TATTAAGCAGGATCCTCAATTGATCCAGCAGTTAATTGAGCTTTACCATGAGATGACCAAATCTCAGATGAGTTTTTTGG
ACTTGGAGAATTTAACAGATGAGGATAAGAGGGCGGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTTAATCAA
GGTCAGTTAGCCCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGTAGTGATTTTAATCA
AATCACCTTGGTCATTGACGGCTTTACTCGTTTTTCTGCTGAGGAAGAGCGGGTTGTGGACTTACTTCACGGCAAAGGTG
TTGAGATTGTTATCGGGGCTTATGCTAGTAAGAAAGCCTATACCAGTCCTTTTAGCGAGGGCAATCTCTACCAAGCCAGC
GTAAAATTTCTCCATCATCTGGCTTCTAAATACCAAACGCCTGCTCAGGACTGTTCTCAAACTCATGAGAAGATGGATAG
TTTTGACAAGGCCTCTCGTTTGTTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTGGATGTCGATGAGAAAGACCGTG
AAAATTTACAAATCTGGTCTTGTTTGACGCAAAAGGAGGAGTTGGAGCTAGTAGCCCGTAGCATTCGTCAGAAATTACAT
GAGAACTCAGACCTGAGCTACAAGCATTTTCGTATTCTCTTGGGGGATGTAGCTTCTTACCAGTTATCTCTCAAAACCAT
TTTTGACCAGTATCAGATTCCTTTTTATCTTGGTAGAAGCGAAGCCATGGCTCATCATCCCTTGACTCAGTTTGTCGAGT
CTATTTTAGCTTTAAAACGTTACCGTTTTCGTCAGGAGGATTTGATTAATCTTCTTAGAACTGATTTGTATACTGACCTC
AGTCAGTCTGATATTGATGCTTTTGAGCAATATATCCGCTATCTTGGTATCAATGGCTTGCCAGCCTTTCAGCAAACTTT
CACCAAATCCCACCATGGAAAATTTAATCTTGAGCGTTTGAATGTCCTCCGCCTGAGAATTTTAGCACCTCTTGAAACCC
TCTTTGCCAGCCGAAAACAAAAGGCTGAAAACCTCCTACAAAAATGGAGTGTCTTTCTAAAAGAAGGAGCTGTGACCAAG
CAGTTACAAGATTTGACAACCACTTTGGAAGCTGTAGAACAGGAAAGACAAGCCGAAGTTTGGAAGGCTTTCTGCCATGT
TTTAGAACAATTTGCGACTGTTTTTGCTGGTTCACAGGTTAGTCTGGAAGACTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCCCAATACCGTACCATTCCAGCAACAGTGGACACTGTTCTGGTGCAGAGTTACGATTTGATTGCACCATTGACT
GCTGACTTTGTCTATGCTATTGGACTAACTCAGGACAATTTACCAAAAATTTCTCAAAACACCAGTCTTCTGACAGATGA
AGAAAGGCAAAACCTAAACCAAACGACCGAAGAAGGCGTTCAATTACTGATTGCCAGCAGTGAAAATCTCAAGAAAAATC
GCTACACTATGCTTTCCTTGGTCAATTCTGCTCGTAAGCAGTTGTTCTTGTCGGCTCCAAGCCTTTTTAACGAAAGTGAA
AGTAAGGAATCTGCCTATCTTCAAGAGTTGATCCATTTTGGATTTAGGCGGAGAGAGAAGAGGATGAATCACAAAGGACT
GTCTAAGGAGGATATGGGGTCCTATCACAGTCTTTTGTCTAGTCTGGTTGCCTATCACCAGCAGGGTGAGATGAGCGATA
CTGAGCAAGATTTGACTTTTGTCAAGGTTCTGTCGCGTGTCATAGGTAAAAAACTAGATCAGCAAGGTCTGGAAAATCCA
GCCATCCCAATCAGTCCAAGCAGCAAGACCTTAGCCAAGGACACCTTGCAAGCTCTCTATCCTGCCAAACAGGAGTTTTA
CCTGTCTACGTCGGGTTTGACAGAGTTTTATCGCAATGAATACAGTTATTTCCTACGCTACGTTTTAGGCTTGCAGGAGG
AATTACGTTTGCGTCCTGATGCCCGTAGTCACGGGAATTTCTTGCATCGTATCTTTGAACGCGCCTTGCAGTTGCCTAAT
GAAGATTCCTTTGACCAACGTCTAGAACAAGCTATTCAAGAAACCAGTCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTTTGCTTGATGTTGCACGGACAACTGGACATATTCTCCGACACAATCCAG
CCATCGAAACAATCAAAGAAGAAGCAAATTTTGGTGGAAAAGACCAAGCCTTTATTCAATTAGACAATGGACGCAGTGTC
TTTGTACGAGGCAAGGTGGACCGGATTGACCGTTTGAAAGCTAATGGAGCGATAGGAGTAGTAGACTACAAATCCAGTCT
GACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTCAATTCTCAGTTACCAACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGCGCCATGTACTTGGAAATGGCTGAACCTGTCCAATCTCTGATGGCGGTAAAAAGTCTGGCA
GGAGCAGTGGTAGAAGCCAGCAAATCTATGAAATACCAAGGGCTCTTCTTGGAAAAAGAAAGCAGTTATTTAGGCGAATT
TTATAACAAAAACAAGGCGAATCAACTGACAGATGAGGAATTTCAGCTCCTACTGGACTACAATGCCTATCTTTACAAGA
AAGCTGCTGAGAAGATTTTAGCAGGCCGGTTCGCCATCAATCCTTATACTGAAAATGGCAGAAGCATTGCCCCATACGTC
CAGCAACATCAGGCTATTACAGGCTTTGAAGCCAATTACCATCTGGGCCAAGCCCGTTTCCTAGAAAAGTTGGACCTAGC
TGATGGCAAGCGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGCTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

99.267

100

0.993

Multiple sequence alignment