Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   QHG52_RS02665 Genome accession   NZ_CP123912
Coordinates   565157..566038 (+) Length   293 a.a.
NCBI ID   WP_004825113.1    Uniprot ID   N8X7E6
Organism   Acinetobacter bereziniae strain UCO-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 560157..571038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG52_RS02635 wrbA 560316..560909 (+) 594 WP_004825125.1 NAD(P)H:quinone oxidoreductase -
  QHG52_RS02640 - 561089..561454 (-) 366 WP_005033964.1 hypothetical protein -
  QHG52_RS02645 - 561687..562550 (-) 864 WP_200150090.1 acyl-CoA thioesterase domain-containing protein -
  QHG52_RS02650 - 562702..563277 (-) 576 WP_004825120.1 xanthine phosphoribosyltransferase -
  QHG52_RS02655 - 563381..564088 (-) 708 WP_005033960.1 DUF3108 domain-containing protein -
  QHG52_RS02660 - 564240..564926 (-) 687 WP_005033958.1 hypothetical protein -
  QHG52_RS02665 tonB2 565157..566038 (+) 882 WP_004825113.1 TonB family protein Machinery gene
  QHG52_RS02670 - 566114..566596 (-) 483 WP_005033955.1 ankyrin repeat domain-containing protein -
  QHG52_RS02675 - 566703..566987 (-) 285 WP_004825107.1 antibiotic biosynthesis monooxygenase -
  QHG52_RS02680 - 567086..567997 (-) 912 WP_004825105.1 bestrophin family protein -
  QHG52_RS02685 radC 568036..568758 (-) 723 WP_004825103.1 DNA repair protein RadC -
  QHG52_RS02690 coaBC 568873..570138 (+) 1266 WP_005033953.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  QHG52_RS02695 - 570303..570677 (+) 375 WP_004825098.1 cytochrome b562 -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33348.89 Da        Isoelectric Point: 8.3470

>NTDB_id=823063 QHG52_RS02665 WP_004825113.1 565157..566038(+) (tonB2) [Acinetobacter bereziniae strain UCO-553]
MIKKLFANTQHTGYWWQDALFVGAVSIAVIVHGLFLSVQFGMPQENNTATKEIAVSIRPSEDKVKDADFLAQADQQGSGT
FRKEHRMSSDMPAQAEDKSAGDQQLEALEQIQQKRELKFEEKVLMTVLSWQKQAEQNDRKKAMEELQSQMQAKAAMVASL
EAQYLQKQQNFSKQQKIKTLDGIQAKQDASAGYLDKFREKVEMYGNRYYPDLAKQQRLSGEVRLMVILNNEGGIRAIRLI
ESSGHAILDEAAKNSVRKGAPFGRFDAKMKDISELRIVRTWRFDPAESEFEVH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=823063 QHG52_RS02665 WP_004825113.1 565157..566038(+) (tonB2) [Acinetobacter bereziniae strain UCO-553]
ATGATAAAAAAATTATTTGCCAATACGCAACATACTGGGTACTGGTGGCAAGATGCATTATTTGTCGGGGCAGTTTCAAT
TGCTGTAATTGTCCACGGGTTATTTTTATCTGTGCAATTTGGTATGCCGCAAGAAAATAATACTGCGACAAAAGAAATTG
CTGTCAGTATTCGCCCAAGTGAAGATAAAGTCAAAGATGCTGATTTCCTTGCGCAAGCAGATCAACAAGGTTCAGGAACC
TTTCGTAAAGAACATCGGATGTCCTCTGATATGCCAGCACAAGCTGAAGATAAAAGTGCAGGGGATCAACAGCTTGAAGC
TTTAGAGCAAATACAGCAAAAACGTGAATTAAAATTTGAAGAAAAAGTGCTGATGACCGTTTTAAGTTGGCAAAAGCAAG
CTGAACAAAACGATCGAAAAAAGGCAATGGAAGAATTACAAAGCCAAATGCAAGCCAAAGCCGCGATGGTGGCGAGCTTA
GAAGCACAATATTTACAAAAGCAGCAAAATTTTAGTAAACAACAAAAAATTAAAACCTTAGATGGCATTCAAGCGAAACA
AGATGCATCGGCTGGTTATTTGGATAAATTCCGTGAAAAAGTCGAAATGTATGGCAACCGCTATTATCCTGATCTTGCTA
AGCAACAGCGCCTTTCAGGTGAAGTTCGTTTAATGGTGATTCTGAATAATGAAGGGGGAATACGGGCAATTCGTTTAATC
GAAAGTTCAGGTCATGCCATTTTAGATGAAGCCGCTAAAAATTCGGTACGTAAGGGTGCTCCATTTGGACGTTTTGATGC
AAAAATGAAAGATATTTCTGAACTACGAATTGTCAGAACGTGGCGTTTCGATCCCGCTGAGTCTGAATTTGAAGTCCATT
AG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8X7E6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.109

100

0.724