Detailed information NTG0822983

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PZA16_RS22405
• Genome accession: NZ_CP123875
• Coordinates: 4321320..4322120 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain SC-KP585
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4316320..4327120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PZA16_RS22370	gspH	4316476..4316991 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
PZA16_RS22375	gspI	4316988..4317353 (+)	366	WP_048993360.1	type II secretion system minor pseudopilin GspI	-
PZA16_RS22380	gspJ	4317350..4317946 (+)	597	WP_009309266.1	type II secretion system minor pseudopilin GspJ	-
PZA16_RS22385	gspK	4317943..4318929 (+)	987	WP_096609095.1	type II secretion system minor pseudopilin GspK	-
PZA16_RS22390	gspL	4318916..4320109 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
PZA16_RS22395	-	4320102..4320587 (+)	486	WP_025368434.1	type II secretion system protein M	-
PZA16_RS22400	-	4320577..4321323 (+)	747	WP_048993359.1	type II secretion system protein N	-
PZA16_RS22405	pilD	4321320..4322120 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
PZA16_RS22410	hrpB	4322168..4324597 (-)	2430	WP_038806673.1	ATP-dependent helicase HrpB	-
PZA16_RS22415	thpR	4324670..4325206 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
PZA16_RS22420	sfsA	4325206..4325922 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
PZA16_RS22425	dksA	4326085..4326540 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=822983 PZA16_RS22405 WP_004145898.1 4321320..4322120(+) (pilD) [Klebsiella pneumoniae strain SC-KP585]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=822983 PZA16_RS22405 WP_004145898.1 4321320..4322120(+) (pilD) [Klebsiella pneumoniae strain SC-KP585]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425