Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QGN29_RS11280 Genome accession   NZ_CP123872
Coordinates   2519875..2521236 (-) Length   453 a.a.
NCBI ID   WP_310797966.1    Uniprot ID   A0AA52EC89
Organism   Temperatibacter marinus strain NBRC 110045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2514875..2526236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QGN29_RS11265 (QGN29_11265) - 2516777..2517514 (-) 738 WP_310797963.1 SDR family NAD(P)-dependent oxidoreductase -
  QGN29_RS11270 (QGN29_11270) purF 2517547..2519010 (-) 1464 WP_375164705.1 amidophosphoribosyltransferase -
  QGN29_RS11275 (QGN29_11275) - 2519161..2519835 (-) 675 WP_310797965.1 CvpA family protein -
  QGN29_RS11280 (QGN29_11280) radA 2519875..2521236 (-) 1362 WP_310797966.1 DNA repair protein RadA Machinery gene
  QGN29_RS11285 (QGN29_11285) - 2521238..2522014 (-) 777 WP_310797967.1 ATP-binding cassette domain-containing protein -
  QGN29_RS11290 (QGN29_11290) - 2522014..2522814 (-) 801 WP_310797968.1 ABC transporter permease -
  QGN29_RS11295 (QGN29_11295) - 2522947..2524449 (-) 1503 WP_310797969.1 DEAD/DEAH box helicase -
  QGN29_RS11300 (QGN29_11300) - 2524588..2525292 (+) 705 WP_310797970.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47988.82 Da        Isoelectric Point: 6.3665

>NTDB_id=822961 QGN29_RS11280 WP_310797966.1 2519875..2521236(-) (radA) [Temperatibacter marinus strain NBRC 110045]
MAKTQKEFACQSCGAVYRKWQGKCDSCNEWNTIEETAGVVSGTPKGLSGKKGRKVELVSLNSPHEEQARLSTGIGEFDRA
LGGGIVKGSATLIGGDPGIGKSTLLLQAMASLASRGEDVIYISGEEATAQIQMRAQRLGLADSPMKLGAETNLRDILTTL
NEGPAPAAVVIDSIQTIFGDSVESAPGTVTQVRLCSHELISFAKRSGSAVFIVGHVTKDGQIAGPRVLEHMVDTVLYFEG
DRGHQFRILRAVKNRFGGTDEIGVFEMTGLGLSEVKNPSALFLADRNEREPGSCVFAGIEGSRPVLVEIQALVSQSSAAN
PRRAVVGWDSSRLSMILAVLDARAGLGLSNCDVYLNVAGGLRVTEPAADLAVATALISSLAEVPLPPETVVFGEVSLSGD
VRAVSQADARLKEAEKLGFVRALMPKARKTGKQNITQDIVSRLAEIVDRFMPS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=822961 QGN29_RS11280 WP_310797966.1 2519875..2521236(-) (radA) [Temperatibacter marinus strain NBRC 110045]
ATGGCTAAAACTCAAAAAGAATTTGCCTGTCAAAGTTGCGGTGCCGTTTATCGAAAATGGCAAGGAAAATGCGACAGTTG
CAATGAGTGGAATACCATCGAAGAAACAGCAGGCGTTGTCTCGGGTACGCCCAAAGGCCTGAGTGGGAAAAAAGGTCGTA
AGGTAGAACTTGTTTCTTTGAACAGTCCTCACGAGGAACAGGCTCGATTGTCCACTGGAATTGGCGAGTTTGATCGTGCA
CTGGGTGGGGGTATAGTAAAGGGCAGCGCAACCTTAATTGGTGGTGATCCCGGCATCGGAAAGTCAACTCTTCTCCTACA
AGCCATGGCCTCTTTGGCCTCTCGCGGTGAAGATGTTATTTATATTTCTGGAGAGGAAGCAACCGCGCAAATTCAAATGC
GAGCACAAAGATTAGGTCTAGCCGATAGCCCTATGAAATTAGGGGCCGAAACAAATCTTCGAGATATTCTCACCACACTA
AATGAAGGGCCTGCACCTGCTGCTGTGGTGATCGATTCTATTCAGACAATTTTTGGCGATAGCGTCGAAAGTGCACCAGG
CACAGTGACGCAAGTTCGTTTATGTTCCCATGAACTCATTTCTTTTGCAAAACGTTCTGGCAGTGCAGTCTTCATTGTAG
GTCATGTTACGAAAGATGGCCAAATCGCAGGGCCTCGAGTTCTAGAACATATGGTTGATACAGTGCTATATTTTGAGGGG
GACCGAGGACATCAGTTCAGAATATTGCGTGCCGTGAAAAATCGTTTCGGTGGCACTGATGAAATCGGCGTTTTTGAAAT
GACTGGTCTGGGGTTATCAGAAGTGAAAAATCCTTCTGCCCTTTTCTTAGCGGATCGAAATGAACGCGAACCAGGGAGCT
GTGTTTTCGCAGGGATTGAAGGTAGCCGTCCTGTCTTGGTTGAAATCCAAGCTCTCGTCAGCCAATCTTCTGCTGCAAAC
CCTCGGCGTGCTGTCGTTGGATGGGACAGCAGTCGGCTTTCAATGATTCTTGCTGTCCTTGATGCACGCGCTGGTCTCGG
TCTCTCCAATTGTGATGTTTATTTGAATGTTGCCGGTGGCTTGCGGGTGACAGAACCTGCTGCAGATCTAGCGGTTGCTA
CTGCCCTGATCAGTTCACTGGCAGAAGTGCCCCTTCCCCCAGAAACCGTCGTTTTCGGAGAAGTAAGCCTTTCTGGGGAC
GTCAGAGCCGTGTCCCAAGCAGACGCGAGACTGAAGGAAGCTGAAAAATTGGGTTTTGTAAGAGCATTGATGCCTAAAGC
AAGAAAAACGGGAAAACAAAATATAACACAAGACATTGTTAGTCGCCTTGCAGAAATTGTAGACCGATTTATGCCAAGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(350-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.376

96.247

0.494
  radA Streptococcus mitis NCTC 12261

48.73

95.585

0.466
  radA Streptococcus pneumoniae Rx1

48.499

95.585

0.464
  radA Streptococcus pneumoniae D39

48.499

95.585

0.464
  radA Streptococcus pneumoniae R6

48.499

95.585

0.464
  radA Streptococcus pneumoniae TIGR4

48.499

95.585

0.464
  radA Streptococcus mitis SK321

48.499

95.585

0.464