Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   R6Y88_RS18740 Genome accession   NZ_CP137687
Coordinates   3689532..3690659 (+) Length   375 a.a.
NCBI ID   WP_015483467.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3684532..3695659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS18715 - 3685226..3685948 (+) 723 WP_015384163.1 NPP1 family protein -
  R6Y88_RS18720 - 3686194..3686379 (-) 186 WP_015384162.1 SMI1/KNR4 family protein -
  R6Y88_RS18725 - 3686716..3687020 (-) 305 Protein_3625 tRNA-Val4 -
  R6Y88_RS18730 cdiI 3687073..3687432 (-) 360 WP_015384160.1 ribonuclease toxin immunity protein CdiI -
  R6Y88_RS18735 - 3687454..3689346 (-) 1893 WP_015483468.1 T7SS effector LXG polymorphic toxin -
  R6Y88_RS18740 rapC 3689532..3690659 (+) 1128 WP_015483467.1 Rap family tetratricopeptide repeat protein Regulator
  R6Y88_RS18745 - 3691208..3691633 (-) 426 WP_046340254.1 EVE domain-containing protein -
  R6Y88_RS18750 - 3691638..3692030 (-) 393 WP_046340253.1 rhodanese-like domain-containing protein -
  R6Y88_RS18755 - 3692051..3692470 (-) 420 WP_015483464.1 MarR family winged helix-turn-helix transcriptional regulator -
  R6Y88_RS18760 yrkK 3692777..3693253 (+) 477 WP_015483463.1 HXXEE domain-containing protein -
  R6Y88_RS18765 yrkL 3693500..3694024 (+) 525 WP_015384155.1 NAD(P)H-dependent oxidoreductase -
  R6Y88_RS18770 - 3694481..3694603 (+) 123 WP_015483462.1 hypothetical protein -
  R6Y88_RS18775 - 3694600..3694725 (+) 126 Protein_3635 recombinase -
  R6Y88_RS18780 - 3694764..3695152 (-) 389 Protein_3636 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44180.37 Da        Isoelectric Point: 5.6714

>NTDB_id=822852 R6Y88_RS18740 WP_015483467.1 3689532..3690659(+) (rapC) [Bacillus subtilis strain YT-4]
MNLVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQQGVNQTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=822852 R6Y88_RS18740 WP_015483467.1 3689532..3690659(+) (rapC) [Bacillus subtilis strain YT-4]
GTGAATCTGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACAACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTATTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCAGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAGAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAAAGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATCAAACAATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_8)

(259-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(195-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

100

0.445
  rapF Bacillus subtilis subsp. subtilis str. 168

39.683

100

0.4