Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QG728_RS10660 Genome accession   NZ_CP123854
Coordinates   2223222..2223857 (-) Length   211 a.a.
NCBI ID   WP_002044982.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WB4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218222..2228857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG728_RS10625 (QG728_10625) mlaE 2218558..2219334 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  QG728_RS10630 (QG728_10630) - 2219334..2220014 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  QG728_RS10635 (QG728_10635) - 2220041..2220682 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  QG728_RS10640 (QG728_10640) - 2220694..2220981 (+) 288 WP_000250997.1 STAS domain-containing protein -
  QG728_RS10645 (QG728_10645) - 2221051..2222064 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  QG728_RS10650 (QG728_10650) - 2222222..2222803 (+) 582 WP_002045018.1 TIGR00730 family Rossman fold protein -
  QG728_RS10655 (QG728_10655) - 2222818..2223219 (+) 402 WP_000849701.1 NUDIX domain-containing protein -
  QG728_RS10660 (QG728_10660) comF 2223222..2223857 (-) 636 WP_002044982.1 phosphoribosyltransferase family protein Machinery gene
  QG728_RS10665 (QG728_10665) recG 2223850..2225895 (-) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  QG728_RS10670 (QG728_10670) - 2225916..2226731 (+) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  QG728_RS10675 (QG728_10675) adeT2 2226811..2227797 (+) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24591.77 Da        Isoelectric Point: 9.7140

>NTDB_id=822852 QG728_RS10660 WP_002044982.1 2223222..2223857(-) (comF) [Acinetobacter baumannii strain WB4]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTLY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=822852 QG728_RS10660 WP_002044982.1 2223222..2223857(-) (comF) [Acinetobacter baumannii strain WB4]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAACAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCTTTATTACTCGCTAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTCAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATTATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986