Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QG728_RS10165 Genome accession   NZ_CP123854
Coordinates   2120505..2121032 (+) Length   175 a.a.
NCBI ID   WP_262094050.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WB4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2115505..2126032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG728_RS10150 (QG728_10150) pilM 2118058..2119116 (+) 1059 WP_262094052.1 pilus assembly protein PilM Machinery gene
  QG728_RS10155 (QG728_10155) pilN 2119116..2119757 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  QG728_RS10160 (QG728_10160) pilO 2119754..2120494 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  QG728_RS10165 (QG728_10165) pilP 2120505..2121032 (+) 528 WP_262094050.1 pilus assembly protein PilP Machinery gene
  QG728_RS10170 (QG728_10170) pilQ 2121095..2123260 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  QG728_RS10175 (QG728_10175) aroK 2123272..2123841 (+) 570 WP_000643712.1 shikimate kinase AroK -
  QG728_RS10180 (QG728_10180) aroB 2123870..2124952 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  QG728_RS10185 (QG728_10185) - 2124968..2125843 (+) 876 WP_000218807.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19447.69 Da        Isoelectric Point: 8.9898

>NTDB_id=822850 QG728_RS10165 WP_262094050.1 2120505..2121032(+) (pilP) [Acinetobacter baumannii strain WB4]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRVPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=822850 QG728_RS10165 WP_262094050.1 2120505..2121032(+) (pilP) [Acinetobacter baumannii strain WB4]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGTGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714