Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   QG728_RS07335 Genome accession   NZ_CP123854
Coordinates   1523340..1523666 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain WB4     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1518340..1528666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG728_RS07315 (QG728_07315) - 1518446..1519075 (-) 630 WP_000219964.1 FHA domain-containing protein -
  QG728_RS07320 (QG728_07320) gspD 1519116..1521386 (-) 2271 WP_001196431.1 type II secretion system secretin GspD -
  QG728_RS07325 (QG728_07325) - 1521428..1522264 (-) 837 WP_272365792.1 type II secretion system protein N -
  QG728_RS07330 (QG728_07330) gspN 1522264..1523007 (-) 744 WP_000730343.1 type II secretion system protein N -
  QG728_RS07335 (QG728_07335) hns 1523340..1523666 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  QG728_RS07340 (QG728_07340) - 1523861..1524301 (-) 441 WP_000661569.1 thioesterase family protein -
  QG728_RS07345 (QG728_07345) - 1524309..1525502 (-) 1194 WP_000681777.1 hypothetical protein -
  QG728_RS07350 (QG728_07350) - 1525512..1526351 (-) 840 WP_002044812.1 hypothetical protein -
  QG728_RS07355 (QG728_07355) - 1526360..1527127 (-) 768 WP_000897420.1 uroporphyrinogen-III synthase -
  QG728_RS07360 (QG728_07360) hemC 1527132..1528049 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=822837 QG728_RS07335 WP_000801427.1 1523340..1523666(-) (hns) [Acinetobacter baumannii strain WB4]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=822837 QG728_RS07335 WP_000801427.1 1523340..1523666(-) (hns) [Acinetobacter baumannii strain WB4]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1