Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   R6Y88_RS15880 Genome accession   NZ_CP137687
Coordinates   3146572..3147432 (+) Length   286 a.a.
NCBI ID   WP_015483633.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3141572..3152432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS15850 pncA 3142036..3142587 (+) 552 WP_014477836.1 cysteine hydrolase family protein -
  R6Y88_RS15855 pncB 3142603..3144075 (+) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  R6Y88_RS15860 pdeH 3144212..3145441 (+) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  R6Y88_RS15865 - 3145417..3145785 (-) 369 WP_015483634.1 hypothetical protein -
  R6Y88_RS15870 - 3145963..3146025 (-) 63 Protein_3081 hypothetical protein -
  R6Y88_RS15875 degQ 3146247..3146387 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  R6Y88_RS15880 comQ 3146572..3147432 (+) 861 WP_015483633.1 polyprenyl synthetase family protein Regulator
  R6Y88_RS15885 comX 3147445..3147609 (+) 165 WP_015384519.1 competence pheromone ComX -
  R6Y88_RS15890 comP 3147621..3149921 (+) 2301 WP_046340263.1 histidine kinase Regulator
  R6Y88_RS15895 comA 3150002..3150646 (+) 645 WP_375060239.1 two-component system response regulator ComA Regulator
  R6Y88_RS15900 yuxO 3150664..3151044 (+) 381 WP_015483631.1 hotdog fold thioesterase -
  R6Y88_RS15905 mnhG 3151083..3151457 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  R6Y88_RS15910 mrpF 3151441..3151725 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  R6Y88_RS15915 mrpE 3151725..3152201 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32511.47 Da        Isoelectric Point: 4.7414

>NTDB_id=822832 R6Y88_RS15880 WP_015483633.1 3146572..3147432(+) (comQ) [Bacillus subtilis strain YT-4]
MKEIVSQKIMNQDLERYLQNFIESKDTFEFADLALHHYLAFNGQDQKAIELLAAGIELLILSFDIYDDLEDQDNGSAVWM
KIDSSIALNAVTALYTLSIQVMCQASHEPEFTQEILNFALQSIQGQHDDIVNAPQTEEACLEMIKNKSGALTALPCVMGV
MLATGKYHPIVASYSYELGIIAQIENDYQGLYYLNNDFIQKKNTLAYLYLNKRFNAASAEILSWYENAELFLSLNPKQIK
EKLTEAGVVQYLLVMKHLSLQKLKKEIARLELQENKIKKLITGIIK

Nucleotide


Download         Length: 861 bp        

>NTDB_id=822832 R6Y88_RS15880 WP_015483633.1 3146572..3147432(+) (comQ) [Bacillus subtilis strain YT-4]
ATGAAGGAGATTGTAAGCCAAAAAATAATGAATCAGGACTTGGAACGATATCTTCAGAATTTTATTGAGTCTAAGGATAC
GTTTGAGTTTGCCGATTTGGCTCTTCATCATTATTTAGCTTTTAACGGTCAGGACCAAAAAGCAATCGAATTGCTAGCTG
CCGGAATTGAATTGCTTATACTCTCATTCGATATTTATGATGACTTAGAGGATCAAGATAATGGAAGTGCTGTCTGGATG
AAGATTGACTCGTCAATCGCTTTAAATGCAGTTACAGCTCTTTACACCCTAAGTATACAAGTGATGTGTCAAGCTAGTCA
TGAACCAGAATTTACACAAGAGATATTGAATTTTGCGTTACAATCAATTCAAGGCCAGCATGATGATATTGTGAATGCGC
CGCAAACTGAAGAAGCCTGTCTTGAAATGATCAAAAATAAATCAGGAGCGCTAACGGCATTGCCCTGTGTAATGGGAGTA
ATGTTGGCAACAGGCAAATACCATCCCATTGTAGCTTCTTATTCTTATGAACTTGGGATTATTGCACAAATCGAAAATGA
TTACCAAGGTTTATATTATTTAAATAACGATTTTATTCAGAAGAAAAACACATTGGCATACTTATACTTAAATAAACGTT
TTAATGCAGCTTCTGCAGAAATCTTGAGTTGGTATGAAAATGCTGAGTTGTTCTTATCATTGAATCCCAAACAAATAAAA
GAAAAATTAACTGAGGCAGGCGTAGTGCAATATTTACTTGTAATGAAACACTTGTCATTACAAAAACTAAAGAAAGAAAT
TGCTAGATTAGAATTGCAAGAGAATAAAATAAAAAAATTAATAACAGGAATCATAAAATAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(39-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45.423

99.301

0.451