Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   R6Y88_RS10600 Genome accession   NZ_CP137687
Coordinates   2092436..2092666 (-) Length   76 a.a.
NCBI ID   WP_015482693.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2087436..2097666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS10590 spoVT 2088161..2088697 (-) 537 WP_003218365.1 stage V sporulation protein T -
  R6Y88_RS10595 mfd 2088833..2092366 (-) 3534 WP_014478601.1 transcription-repair coupling factor -
  R6Y88_RS10600 subA/fin 2092436..2092666 (-) 231 WP_015482693.1 anti-sigma-F factor Fin Machinery gene
  R6Y88_RS10605 pth 2092726..2093292 (-) 567 WP_015382565.1 aminoacyl-tRNA hydrolase -
  R6Y88_RS10610 rplYB 2093399..2094013 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  R6Y88_RS10615 prsS 2094099..2095052 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  R6Y88_RS10620 glmU 2095075..2096445 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  R6Y88_RS10625 spoVG 2096638..2096931 (-) 294 WP_003218346.1 septation regulator SpoVG -
  R6Y88_RS10630 ridA 2097126..2097503 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8798.74 Da        Isoelectric Point: 5.3895

>NTDB_id=822800 R6Y88_RS10600 WP_015482693.1 2092436..2092666(-) (subA/fin) [Bacillus subtilis strain YT-4]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHENHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=822800 R6Y88_RS10600 WP_015482693.1 2092436..2092666(-) (subA/fin) [Bacillus subtilis strain YT-4]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAAAATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987